Evangelos Karatzas

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Georgios A. PavlopoulosDirector & Bioinformatics Research Professor @ BSRC Alexander Fleming // CEO BioInnovation GreeceVerified email at fleming.gr
Fotis BaltoumasPost-doctoral Researcher, BSRC "Alexander Fleming"Verified email at fleming.gr
Prof. George M. SpyrouProfessor, Bioinformatics Chair and Department Head, Bioinformatics Department, CINGVerified email at cing.ac.cy
George Kolios, MD, Ph.D (Athens), Ph....Laboratory of Pharmacology, Faculty of Medicine, Democritus University of Thrace, Greece.Verified email at med.duth.gr
Mikaela KoutrouliNovo Nordisk Foundation Center for Protein ResearchVerified email at cpr.ku.dk
George MinadakisThe Cyprus Institute of Neurology and Genetics (CING)Verified email at cing.ac.cy
Aristides EliopoulosNational and Kapodistrian University of AthensVerified email at med.uoa.gr
Foteini ThanatiMSc Systems Biology - Institute for Fundamental Biomedical Research, Biomedical Sciences Research Center “Alexander Fleming”Verified email at aua.gr
Marilena BourdakouPostdoctoral Fellow and Visiting Scientist at Cyprus Institute of Neurology and GeneticsVerified email at cing.ac.cy
Margarita ZachariouThe Cyprus Institute of Neurology and GeneticsVerified email at cs.ucy.ac.cy
Marios TomazouAssociate scientist, Institute of Neurology and GeneticsVerified email at cing.ac.cy
Evangelos PafilisResearcher B, Hellenic Center Marine Research (HCMR)Verified email at hcmr.gr
Anastasis OulasAssociate Scientist at The Cyprus Institute of Neurology and Genetics (CING)Verified email at cing.ac.cy
Christiana ChristodoulouThe Cyprus Institute of Neurology and GeneticsVerified email at cing.ac.cy
Savvas ParagkamianUniversity of Crete - Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC)Verified email at hcmr.gr
Lars Juhl JensenUniversity of CopenhagenVerified email at cpr.ku.dk
Panagiota KontouAssistant Professor, Department of Mathematics, University of ThessalyVerified email at uth.gr
Pantelis BagosProfessor, University of ThessalyVerified email at dib.uth.gr
Emmanouil I AthanasiadisAssistant Professor in Computational Biology and Medical Informatics and Visiting Scientist at OTARVerified email at uniwa.gr
Zoe CourniaDirector or Research, Biomedical Research Foundation, Academy of AthensVerified email at bioacademy.gr

Evangelos Karatzas

EMBL-EBI, Research Fellow

Verified email at ebi.ac.uk - Homepage

Bioinformatics


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A guide to conquer the biological network era using graph theory M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos Frontiers in bioengineering and biotechnology 8, 34, 2020	267	2020
Unraveling the functional dark matter through global metagenomics GA Pavlopoulos, FA Baltoumas, S Liu, O Selvitopi, AP Camargo, ... Nature 622 (7983), 594-602, 2023	72	2023
FLAME: a web tool for functional and literature enrichment analysis of multiple gene lists F Thanati, E Karatzas, F Baltoumas, DJ Stravopodis, AG Eliopoulos, ... biology, 2021	37	2021
Drug repurposing in idiopathic pulmonary fibrosis filtered by a bioinformatics-derived composite score E Karatzas, MM Bourdakou, G Kolios, GM Spyrou Scientific reports 7 (1), 12569, 2017	30	2017
Multi-omics data integration and network-based analysis drives a multiplex drug repurposing approach to a shortlist of candidate drugs against COVID-19 M Tomazou, MM Bourdakou, G Minadakis, M Zachariou, A Oulas, ... Briefings in bioinformatics 22 (6), bbab114, 2021	29	2021
ChemBioServer 2.0: an advanced web server for filtering, clustering and networking of chemical compounds facilitating both drug discovery and repurposing E Karatzas, JE Zamora, E Athanasiadis, D Dellis, Z Cournia, GM Spyrou Bioinformatics 36 (8), 2602-2604, 2020	29	2020
Investigating the transition of pre-symptomatic to symptomatic huntington’s disease status based on omics data CC Christodoulou, M Zachariou, M Tomazou, E Karatzas, CA Demetriou, ... International Journal of Molecular Sciences 21 (19), 7414, 2020	26	2020
Arena3D^web: interactive 3D visualization of multilayered networks E Karatzas, FA Baltoumas, NA Panayiotou, R Schneider, GA Pavlopoulos Nucleic Acids Research 49 (W1), W36-W45, 2021	23	2021
OnTheFly^2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis FA Baltoumas, S Zafeiropoulou, E Karatzas, S Paragkamian, F Thanati, ... NAR Genomics and Bioinformatics 3 (4), lqab090, 2021	21	2021
Darling: a web application for detecting disease-related biomedical entity associations with literature mining E Karatzas, FA Baltoumas, I Kasionis, D Sanoudou, AG Eliopoulos, ... Biomolecules 12 (4), 520, 2022	17	2022
Biomolecule and bioentity interaction databases in systems biology: a comprehensive review FA Baltoumas, S Zafeiropoulou, E Karatzas, M Koutrouli, F Thanati, ... Biomolecules 11 (8), 1245, 2021	16	2021
An application of computational drug repurposing based on transcriptomic signatures E Karatzas, G Kolios, GM Spyrou Computational Methods for Drug Repurposing, 149-177, 2019	16	2019
A web tool for ranking candidate drugs against a selected disease based on a combination of functional and structural criteria E Karatzas, G Minadakis, G Kolios, A Delis, GM Spyrou Computational and structural biotechnology journal 17, 939-945, 2019	14	2019
NORMA: the network makeup artist—a web tool for network annotation visualization M Koutrouli, E Karatzas, K Papanikolopoulou, GA Pavlopoulos Genomics, Proteomics and Bioinformatics 20 (3), 578-586, 2022	11	2022
Arena3D^web: interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application … M Kokoli, E Karatzas, FA Baltoumas, R Schneider, E Pafilis, ... NAR Genomics and Bioinformatics 5 (2), lqad053, 2023	10	2023
VICTOR: A visual analytics web application for comparing cluster sets E Karatzas, M Gkonta, J Hotova, FA Baltoumas, PI Kontou, CJ Bobotsis, ... Computers in Biology and Medicine 135, 104557, 2021	10	2021
Fibrotic expression profile analysis reveals repurposed drugs with potential anti-fibrotic mode of action E Karatzas, AC Kakouri, G Kolios, A Delis, GM Spyrou PLoS One 16 (4), e0249687, 2021	10	2021
PathWalks: Identifying pathway communities using a disease-related map of integrated information E Karatzas, M Zachariou, MM Bourdakou, G Minadakis, A Oulas, G Kolios, ... Bioinformatics 36 (13), 4070-4079, 2020	9	2020
Flame (v2. 0): advanced integration and interpretation of functional enrichment results from multiple sources E Karatzas, FA Baltoumas, E Aplakidou, PI Kontou, P Stathopoulos, ... Bioinformatics 39 (8), btad490, 2023	8	2023
A guide to conquer the biological network era using graph theory. Front Bioeng Biotechnol 2020; 8: 34 M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos	7	2020

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