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Evangelos Karatzas
Evangelos Karatzas
EMBL-EBI, Research Fellow
Verified email at ebi.ac.uk - Homepage
Title
Cited by
Cited by
Year
A guide to conquer the biological network era using graph theory
M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos
Frontiers in bioengineering and biotechnology 8, 34, 2020
2292020
Unraveling the functional dark matter through global metagenomics
GA Pavlopoulos, FA Baltoumas, S Liu, O Selvitopi, AP Camargo, ...
Nature 622 (7983), 594-602, 2023
412023
FLAME: a web tool for functional and literature enrichment analysis of multiple gene lists
F Thanati, E Karatzas, F Baltoumas, DJ Stravopodis, AG Eliopoulos, ...
biology, 2021
352021
Drug repurposing in idiopathic pulmonary fibrosis filtered by a bioinformatics-derived composite score
E Karatzas, MM Bourdakou, G Kolios, GM Spyrou
Scientific reports 7 (1), 12569, 2017
302017
ChemBioServer 2.0: an advanced web server for filtering, clustering and networking of chemical compounds facilitating both drug discovery and repurposing
E Karatzas, JE Zamora, E Athanasiadis, D Dellis, Z Cournia, GM Spyrou
Bioinformatics 36 (8), 2602-2604, 2020
292020
Multi-omics data integration and network-based analysis drives a multiplex drug repurposing approach to a shortlist of candidate drugs against COVID-19
M Tomazou, MM Bourdakou, G Minadakis, M Zachariou, A Oulas, ...
Briefings in bioinformatics 22 (6), bbab114, 2021
252021
Investigating the transition of pre-symptomatic to symptomatic huntington’s disease status based on omics data
CC Christodoulou, M Zachariou, M Tomazou, E Karatzas, CA Demetriou, ...
International Journal of Molecular Sciences 21 (19), 7414, 2020
242020
OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis
FA Baltoumas, S Zafeiropoulou, E Karatzas, S Paragkamian, F Thanati, ...
NAR Genomics and Bioinformatics 3 (4), lqab090, 2021
202021
Arena3Dweb: interactive 3D visualization of multilayered networks
E Karatzas, FA Baltoumas, NA Panayiotou, R Schneider, GA Pavlopoulos
Nucleic Acids Research 49 (W1), W36-W45, 2021
202021
Biomolecule and bioentity interaction databases in systems biology: a comprehensive review
FA Baltoumas, S Zafeiropoulou, E Karatzas, M Koutrouli, F Thanati, ...
Biomolecules 11 (8), 1245, 2021
162021
An application of computational drug repurposing based on transcriptomic signatures
E Karatzas, G Kolios, GM Spyrou
Computational Methods for Drug Repurposing, 149-177, 2019
152019
Darling: a web application for detecting disease-related biomedical entity associations with literature mining
E Karatzas, FA Baltoumas, I Kasionis, D Sanoudou, AG Eliopoulos, ...
Biomolecules 12 (4), 520, 2022
142022
A web tool for ranking candidate drugs against a selected disease based on a combination of functional and structural criteria
E Karatzas, G Minadakis, G Kolios, A Delis, GM Spyrou
Computational and structural biotechnology journal 17, 939-945, 2019
122019
NORMA: the network makeup artist—a web tool for network annotation visualization
M Koutrouli, E Karatzas, K Papanikolopoulou, GA Pavlopoulos
Genomics, Proteomics and Bioinformatics 20 (3), 578-586, 2022
102022
Fibrotic expression profile analysis reveals repurposed drugs with potential anti-fibrotic mode of action
E Karatzas, AC Kakouri, G Kolios, A Delis, GM Spyrou
PLoS One 16 (4), e0249687, 2021
102021
PathWalks: Identifying pathway communities using a disease-related map of integrated information
E Karatzas, M Zachariou, MM Bourdakou, G Minadakis, A Oulas, G Kolios, ...
Bioinformatics 36 (13), 4070-4079, 2020
92020
Arena3Dweb: interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application …
M Kokoli, E Karatzas, FA Baltoumas, R Schneider, E Pafilis, ...
NAR Genomics and Bioinformatics 5 (2), lqad053, 2023
82023
VICTOR: A visual analytics web application for comparing cluster sets
E Karatzas, M Gkonta, J Hotova, FA Baltoumas, PI Kontou, CJ Bobotsis, ...
Computers in Biology and Medicine 135, 104557, 2021
82021
A guide to conquer the biological network era using graph theory. Front Bioeng Biotechnol 2020; 8: 34
M Koutrouli, E Karatzas, D Paez-Espino, GA Pavlopoulos
72020
The network makeup artist (NORMA-2.0): distinguishing annotated groups in a network using innovative layout strategies
E Karatzas, M Koutrouli, FA Baltoumas, K Papanikolopoulou, ...
Bioinformatics Advances 2 (1), vbac036, 2022
52022
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