David Jones

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Janet M ThorntonSenior Scientist, European Molecular Biology Laboratory - European Institute of Bioinformatics (EMBLVerified email at ebi.ac.uk
Kevin BrysonSenior Lecturer in Bioinformatics & Artificial Intelligence, University of GlasgowVerified email at glasgow.ac.uk
Liam McGuffinProfessor of Bioinformatics, University of ReadingVerified email at reading.ac.uk
Christine OrengoProfessor of Bioinformatics, University College LondonVerified email at biochem.ucl.ac.uk
William R TaylorDivision head, Mathematical Biology, National Institute for Medical Research, UKVerified email at nimr.mrc.ac.uk
Daniel BuchanUniversity College LondonVerified email at ucl.ac.uk
Tim NugentResearcher, GSR MarketsVerified email at gsr.io
Shaun M KandathilUniversity College LondonVerified email at ucl.ac.uk
Jonathan WardFetch.aiVerified email at fetch.ai
Mark SwindellsVerified email at ebisu.co.uk
Domenico CozzettoResearch Fellow, Imperial College LondonVerified email at imperial.ac.uk
Joe G GreenerGroup leader, MRC LMBVerified email at mrc-lmb.cam.ac.uk
Prof. Julian GoughMRC Laboratory of Molecular Biology, CambridgeVerified email at mrc-lmb.cam.ac.uk
Lewis MoffatPrev. The Francis Crick Institute & UCLVerified email at ucl.ac.uk
Andrew SeniorGoogle DeepMindVerified email at google.com
Steven CrossanFounder, Dayhoff LabsVerified email at dayhofflabs.com
John JumperDeepMindVerified email at google.com
Richard EvansResearch Fellow, University of WolverhamptonVerified email at wlv.ac.uk
Tim GreenGoogle DeepMindVerified email at google.com
Karen SimonyanChief Scientist, Microsoft AIVerified email at microsoft.com

David Jones

Professor of Bioinformatics, University College London

Verified email at ucl.ac.uk - Homepage

Bioinformatics protein structure computational biology machine learning


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The rapid generation of mutation data matrices from protein sequences DT Jones, WR Taylor, JM Thornton Computer applications in the biosciences: CABIOS 8 (3), 275-282, 1992	7957	1992
Protein secondary structure prediction based on position-specific scoring matrices DT Jones Journal of molecular biology 292 (2), 195-202, 1999	7010	1999
The PSIPRED protein structure prediction server LJ McGuffin, K Bryson, DT Jones Bioinformatics 16 (4), 404-405, 2000	4416	2000
CATH-a hierarchic classification of protein domain structures CA Orengo, AD Michie, S Jones, DT Jones, MB Swindells, JM Thornton Structure 5 (8), 1093-1109, 1997	3418	1997
Improved protein structure prediction using potentials from deep learning AW Senior, R Evans, J Jumper, J Kirkpatrick, L Sifre, T Green, C Qin, ... Nature 577 (7792), 706-710, 2020	3416	2020
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life JJ Ward, JS Sodhi, LJ McGuffin, BF Buxton, DT Jones Journal of molecular biology 337 (3), 635-645, 2004	2411	2004
Classification of intrinsically disordered regions and proteins R van der Lee, M Buljan, B Lang, RJ Weatheritt, GW Daughdrill, ... Chemical reviews 114 (13), 6589-6631, 2014	2158	2014
A new approach to protein fold recognition DT Jones, WR Taylor, JM Thornton Nature 358 (6381), 86-89, 1992	1700	1992
Scalable web services for the PSIPRED Protein Analysis Workbench DWA Buchan, F Minneci, TCO Nugent, K Bryson, DT Jones Nucleic acids research 41 (W1), W349-W357, 2013	1598	2013
The PSIPRED Protein Analysis Workbench: 20 years on DWA Buchan, DT Jones Nucleic acids research 47 (W1), W402-W407, 2019	1298	2019
A guide to machine learning for biologists JG Greener, SM Kandathil, L Moffat, DT Jones Nature Reviews Molecular Cell Biology 23 (1), 40-55, 2022	1226	2022
GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences DT Jones Journal of molecular biology 287 (4), 797-815, 1999	1166	1999
A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013	1111	2013
Protein superfamilies and domain superfolds CA Orengo, DT Jones, JM Thornton Nature 372 (6507), 631-634, 1994	1089	1994
A model recognition approach to the prediction of all-helical membrane protein structure and topology DT Jones, WR Taylor, JM Thornton Biochemistry 33 (10), 3038-3049, 1994	1036	1994
PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments DT Jones, DWA Buchan, D Cozzetto, M Pontil Bioinformatics 28 (2), 184-190, 2011	913	2011
DISOPRED3: precise disordered region predictions with annotated protein-binding activity DT Jones, D Cozzetto Bioinformatics 31 (6), 857-863, 2014	900	2014
Protein structure prediction servers at University College London K Bryson, LJ McGuffin, RL Marsden, JJ Ward, JS Sodhi, DT Jones Nucleic acids research 33 (suppl 2), W36-W38, 2005	900	2005
The DISOPRED server for the prediction of protein disorder JJ Ward, LJ McGuffin, K Bryson, BF Buxton, DT Jones Bioinformatics 20 (13), 2138-2139, 2004	862	2004
Improving the accuracy of transmembrane protein topology prediction using evolutionary information DT Jones Bioinformatics 23 (5), 538-544, 2007	534	2007

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