Steven Singer
Steven Singer
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MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
YW Wu, BA Simmons, SW Singer
Bioinformatics 32 (4), 605-607, 2016
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ...
Nature methods 14 (11), 1063-1071, 2017
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
YW Wu, YH Tang, SG Tringe, BA Simmons, SW Singer
Microbiome 2, 1-18, 2014
Hydrogen transfer to carbonyls and imines from a hydroxycyclopentadienyl ruthenium hydride: evidence for concerted hydride and proton transfer
CP Casey, SW Singer, DR Powell, RK Hayashi, M Kavana
Journal of the American Chemical Society 123 (6), 1090-1100, 2001
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
CS Miller, BJ Baker, BC Thomas, SW Singer, JF Banfield
Genome biology 12, 1-14, 2011
Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing “Leptospirillum rubarum”(Group II) and “Leptospirillum ferrodiazotrophum”(Group III) bacteria in …
DSA Goltsman, VJ Denef, SW Singer, NC VerBerkmoes, M Lefsrud, ...
Applied and environmental microbiology 75 (13), 4599-4615, 2009
Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment
CJ Castelle, LA Hug, KC Wrighton, BC Thomas, KH Williams, D Wu, ...
Nature communications 4 (1), 2120, 2013
One-pot ionic liquid pretreatment and saccharification of switchgrass
J Shi, JM Gladden, N Sathitsuksanoh, P Kambam, L Sandoval, D Mitra, ...
Green Chemistry 15 (9), 2579-2589, 2013
Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists
E Martino, E Morin, GA Grelet, A Kuo, A Kohler, S Daghino, KW Barry, ...
New Phytologist 217 (3), 1213-1229, 2018
Machine learning for metabolic engineering: A review
CE Lawson, JM Martí, T Radivojevic, SVR Jonnalagadda, R Gentz, ...
Metabolic Engineering 63, 34-60, 2021
Hydrogen elimination from a hydroxycyclopentadienyl ruthenium (II) hydride: Study of hydrogen activation in a ligand− metal bifunctional hydrogenation catalyst
CP Casey, JB Johnson, SW Singer, Q Cui
Journal of the American Chemical Society 127 (9), 3100-3109, 2005
Microbial production of advanced biofuels
J Keasling, H Garcia Martin, TS Lee, A Mukhopadhyay, SW Singer, ...
Nature Reviews Microbiology 19 (11), 701-715, 2021
Engineering of Ralstonia eutropha H16 for autotrophic and heterotrophic production of methyl ketones
J Mueller, D MacEachran, H Burd, N Sathitsuksanoh, C Bi, YC Yeh, ...
Applied and environmental microbiology 79 (14), 4433-4439, 2013
Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts
J Yaegashi, J Kirby, M Ito, J Sun, T Dutta, M Mirsiaghi, ER Sundstrom, ...
Biotechnology for biofuels 10, 1-13, 2017
A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels
JI Park, EJ Steen, H Burd, SS Evans, AM Redding-Johnson, T Batth, ...
PloS one 7 (5), e37010, 2012
Development of a broad-host synthetic biology toolbox for Ralstonia eutropha and its application to engineering hydrocarbon biofuel production
C Bi, P Su, J Müller, YC Yeh, SR Chhabra, HR Beller, SW Singer, ...
Microbial cell factories 12, 1-10, 2013
Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass
JM Gladden, M Allgaier, CS Miller, TC Hazen, JS VanderGheynst, ...
Applied and environmental microbiology 77 (16), 5804-5812, 2011
Expansion of the global RNA virome reveals diverse clades of bacteriophages
U Neri, YI Wolf, S Roux, AP Camargo, B Lee, D Kazlauskas, IM Chen, ...
Cell 185 (21), 4023-4037. e18, 2022
Strategies for enhancing the effectiveness of metagenomic-based enzyme discovery in lignocellulolytic microbial communities
KM DeAngelis, JM Gladden, M Allgaier, P D’haeseleer, JL Fortney, ...
Bioenergy Research 3, 146-158, 2010
Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions
SD McClendon, T Batth, CJ Petzold, PD Adams, BA Simmons, SW Singer
Biotechnology for biofuels 5, 1-10, 2012
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