| A practical guide to building owl ontologies using protégé 4 and co-ode tools edition1. 2 M Horridge, S Jupp, G Moulton, A Rector, R Stevens, C Wroe The university of Manchester 107, 2009 | 693 | 2009 |
| Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants R Petryszak, M Keays, YA Tang, NA Fonseca, E Barrera, T Burdett, ... Nucleic acids research 44 (D1), D746-D752, 2016 | 437 | 2016 |
| Expression Atlas update—a database of gene and transcript expression from microarray-and sequencing-based functional genomics experiments R Petryszak, T Burdett, B Fiorelli, NA Fonseca, M Gonzalez-Porta, ... Nucleic acids research 42 (D1), D926-D932, 2014 | 302 | 2014 |
| The EBI RDF platform: linked open data for the life sciences S Jupp, J Malone, J Bolleman, M Brandizi, M Davies, L Garcia, A Gaulton, ... Bioinformatics 30 (9), 1338-1339, 2014 | 226 | 2014 |
| Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ... PLoS biology 15 (6), e2001414, 2017 | 67 | 2017 |
| Populous: a tool for building OWL ontologies from templates S Jupp, M Horridge, L Iannone, J Klein, S Owen, J Schanstra, ... BMC bioinformatics 13 (1), 1-12, 2012 | 51 | 2012 |
| A new Ontology Lookup Service at EMBL-EBI. S Jupp, T Burdett, C Leroy, HE Parkinson SWAT4LS, 118-119, 2015 | 50 | 2015 |
| Developing a kidney and urinary pathway knowledge base S Jupp, J Klein, J Schanstra, R Stevens Journal of biomedical semantics 2 (2), 1-17, 2011 | 48 | 2011 |
| Using ontologies and vocabularies for dynamic linking S Bechhofer, Y Yesilada, R Stevens, S Jupp, B Horan IEEE Internet Computing 12 (3), 32-39, 2008 | 37 | 2008 |
| Expression Atlas update: from tissues to single cells I Papatheodorou, P Moreno, J Manning, AMP Fuentes, N George, ... Nucleic Acids Research 48 (D1), D77-D83, 2020 | 36 | 2020 |
| The KUPKB: a novel Web application to access multiomics data on kidney disease J Klein, S Jupp, P Moulos, M Fernandez, B Buffin‐Meyer, A Casemayou, ... The FASEB Journal 26 (5), 2145-2153, 2012 | 36 | 2012 |
| Ten simple rules for selecting a bio-ontology J Malone, R Stevens, S Jupp, T Hancocks, H Parkinson, C Brooksbank PLoS computational biology 12 (2), e1004743, 2016 | 35 | 2016 |
| Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation S Sarntivijai, D Vasant, S Jupp, G Saunders, AP Bento, D Gonzalez, ... Journal of biomedical semantics 7 (1), 1-11, 2016 | 34 | 2016 |
| A flexible API and editor for SKOS S Jupp, S Bechhofer, R Stevens European Semantic Web Conference, 506-520, 2009 | 32 | 2009 |
| Issues in learning an ontology from text C Brewster, S Jupp, J Luciano, D Shotton, RD Stevens, Z Zhang BMC bioinformatics 10 (S5), S1, 2009 | 32 | 2009 |
| The cellular microscopy phenotype ontology S Jupp, J Malone, T Burdett, JK Heriche, E Williams, J Ellenberg, ... Journal of biomedical semantics 7 (1), 28, 2016 | 25 | 2016 |
| Ordo: An ontology connecting rare disease, epidemiology and genetic data D Vasant, L Chanas, J Malone, M Hanauer, A Olry, S Jupp, PN Robinson, ... Proceedings of ISMB 30, 2014 | 22 | 2014 |
| Logical gene ontology annotations (goal): exploring gene ontology annotations with owl S Jupp, R Stevens, R Hoehndorf Journal of biomedical semantics 3 (1), 1-16, 2012 | 22 | 2012 |
| SKOS with OWL: Don't be Full-ish! S Jupp, S Bechhofer, R Stevens OWLED 432, 2009-2, 2008 | 22 | 2008 |
| The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species KA Shefchek, NL Harris, M Gargano, N Matentzoglu, D Unni, M Brush, ... Nucleic acids research 48 (D1), D704-D715, 2020 | 20 | 2020 |
