Vahid Abrishami
Vahid Abrishami
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Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy
JM De la Rosa-Trevín, A Quintana, L Del Cano, A Zaldívar, I Foche, ...
Journal of structural biology 195 (1), 93-99, 2016
Alignment of direct detection device micrographs using a robust Optical Flow approach
V Abrishami, J Vargas, X Li, Y Cheng, R Marabini, CÓS Sorzano, ...
Journal of structural biology 189 (3), 163-176, 2015
A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs
V Abrishami, A Zaldívar-Peraza, JM de la Rosa-Trevín, J Vargas, J Otón, ...
Bioinformatics 29 (19), 2460-2468, 2013
Structures of human peroxiredoxin 3 suggest self-chaperoning assembly that maintains catalytic state
NA Yewdall, H Venugopal, A Desfosses, V Abrishami, Y Yosaatmadja, ...
Structure 24 (7), 1120-1129, 2016
A review of resolution measures and related aspects in 3D Electron Microscopy
COS Sorzano, J Vargas, J Otón, V Abrishami, JM De La Rosa-Trevin, ...
Progress in biophysics and molecular biology 124, 1-30, 2017
Particle quality assessment and sorting for automatic and semiautomatic particle-picking techniques
J Vargas, V Abrishami, R Marabini, JM de la Rosa-Trevín, A Zaldivar, ...
Journal of structural biology 183 (3), 342-353, 2013
Fast and accurate conversion of atomic models into electron density maps
OSS Carlos, V Javier, O Joaquín, A Vahid, MRT José, FA Alejandro, ...
AIMS Biophysics 2 (1), 8-20, 2015
A fast iterative convolution weighting approach for gridding-based direct Fourier three-dimensional reconstruction with correction for the contrast transfer function
V Abrishami, JR Bilbao-Castro, J Vargas, R Marabini, JM Carazo, ...
Ultramicroscopy 157, 79-87, 2015
A statistical approach to the initial volume problem in single particle analysis by electron microscopy
COS Sorzano, J Vargas, JM de la Rosa-Trevin, J Oton, ...
Journal of structural biology 189 (3), 213-219, 2015
Tox_ (R) CNN: Deep learning-based nuclei profiling tool for drug toxicity screening
D Jimenez-Carretero, V Abrishami, L Fernández-de-Manuel, I Palacios, ...
PLoS computational biology 14 (11), e1006238, 2018
Localized reconstruction in Scipion expedites the analysis of symmetry mismatches in cryo-EM data
V Abrishami, SL Ilca, J Gomez-Blanco, I Rissanen, JM de la Rosa-Trevín, ...
Progress in Biophysics and Molecular Biology 160, 43-52, 2020
Cryo-EM and the elucidation of new macromolecular structures: random conical tilt revisited
COS Sorzano, M Alcorlo, JM De La Rosa-trevín, R Melero, I Foche, ...
Scientific reports 5 (1), 1-6, 2015
A fast and accurate facial expression synthesis system for color face images using face graph and deep belief network
M Sabzevari, S Toosizadeh, SR Quchani, V Abrishami
2010 International Conference on Electronics and Information Engineering 2 …, 2010
Local analysis of strains and rotations for macromolecular electron microscopy maps
COS Sorzano, A Martín-Ramos, F Prieto, R Melero, J Martín-Benito, ...
Journal of structural biology 195 (1), 123-128, 2016
Outlier detection for single particle analysis in Electron Microscopy
COS Sorzano, J Vargas, JM de la Rosa-Trevın, A Zaldıvar-Peraza, J Otón, ...
IWBBIO 2014, 950, 2014
Real-time pedestrian detecting and tracking in crowded and complicated scenario
V Abrishami, A Rezaee, H Baherzadeh, H Abrishami
IET Digital Library, 2009
New computational methods toward atomic resolution in single particle cryo-electron microscopy
V Abrishami
ENRICH: a fast method to improve the quality of flexible macromolecular reconstructions
M Kazemi, COS Sorzano, JM Carazo, A des Georges, V Abrishami, ...
Progress in Biophysics and Molecular Biology, 2021
Local analysis of strains and rotations for macromolecular electron microscopy maps
A Martin-Ramos, F Prieto, R Melero, J Martin-Benito, S Jonic, ...
CASEIB 2016: 34. annual congress of the Spanish Society of Biomedical …, 2016
An image processing approach to the simulation of electron microscopy volumes of atomic structures
COS Sorzano, J Vargas, J Otón, V Abrishami, JM de la Rosa-Trevín, ...
2014 IEEE International Conference on Image Processing (ICIP), 2095-2099, 2014
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