Herbert M Sauro

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	All	Since 2016
Citations	12321	3814
h-index	47	26
i10-index	107	64

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Co-authors

Michael HuckaCalifornia Institute of TechnologyVerified email at caltech.edu
Frank T. BergmannBioQUANT/COS, Heidelberg University, Heidelberg, GermanyVerified email at caltech.edu
Hamid BolouriBenaroya Research InstituteVerified email at BenaroyaResearch.org
Kyung Hyuk KimSenior Data Scientist, FlipkartVerified email at uw.edu
Chris MyersUniversity of UtahVerified email at ece.utah.edu
Sean C. SleightUniversity of WashingtonVerified email at uw.edu
David FellOxford Brookes UniversityVerified email at brookes.ac.uk
John DoyleCaltechVerified email at caltech.edu
Michal GaldzickiSenior Fellow, University of WashingtonVerified email at uw.edu
Jacob BealBBN TechnologiesVerified email at bbn.com
Anil WipatProfessor of Bioinformatics Newcastle UniversityVerified email at ncl.ac.uk
Matthew PocockComputing Science, Newcastle UniversityVerified email at ncl.ac.uk
Kiri ChoiKorea Institute for Advanced StudyVerified email at uw.edu
John H GennariBiomedical & Health Informatics, University of WashingtonVerified email at uw.edu
Hiroaki KitanoThe Systems Biology Institute, Director / Sony Computer Science Laboratories, Inc., President and CEO / Okinawa Institute of Science and Technology, ProfessorVerified email at sbi.jp
Goksel MisirliKeele UniversityVerified email at keele.ac.uk
Nicholas RoehnerRaytheon BBN TechnologiesVerified email at raytheon.com
Ernst OberortnerLawrence Berkeley National LabsVerified email at lbl.gov
Boris KholodenkoProfessor of Systems Biology, University College DublinVerified email at ucd.ie
Bruce E. ShapiroCalifornia State University, Northridge, RetiredVerified email at csun.edu

Herbert M Sauro

University of Washington

Verified email at u.washington.edu - Homepage

Systems biology synthetic biology


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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ... Bioinformatics 19 (4), 524-531, 2003	3323	2003
The systems biology graphical notation N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009	870	2009
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems N Le Novere, B Bornstein, A Broicher, M Courtot, M Donizelli, H Dharuri, ... Nucleic acids research 34 (suppl_1), D689-D691, 2006	867	2006
Minimum information requested in the annotation of biochemical models (MIRIAM) N Le Novère, A Finney, M Hucka, US Bhalla, F Campagne, ... Nature biotechnology 23 (12), 1509-1515, 2005	601	2005
Metabolic control and its analysis: additional relationships between elasticities and control coefficients DA FELL, HM SAURO European Journal of Biochemistry 148 (3), 555-561, 1985	335	1985
Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration HM Sauro, M Hucka, A Finney, C Wellock, H Bolouri, J Doyle, H Kitano Omics A Journal of Integrative Biology 7 (4), 355-372, 2003	330	2003
Transcriptional dynamics of the embryonic stem cell switch V Chickarmane, C Troein, UA Nuber, HM Sauro, C Peterson PLoS Comput Biol 2 (9), e123, 2006	278	2006
Quantitative analysis of signaling networks HM Sauro, BN Kholodenko Progress in biophysics and molecular biology 86 (1), 5-43, 2004	267	2004
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ... Nature biotechnology 32 (6), 545-550, 2014	250	2014
TinkerCell: modular CAD tool for synthetic biology D Chandran, FT Bergmann, HM Sauro Journal of biological engineering 3 (1), 1-17, 2009	211	2009
SCAMP: a general-purpose simulator and metabolic control analysis program HM Sauro Bioinformatics 9 (4), 441-450, 1993	187	1993
Sensitivity analysis of stoichiometric networks: an extension of metabolic control analysis to non-steady state trajectories BP Ingalls, HM Sauro Journal of theoretical biology 222 (1), 23-36, 2003	176	2003
In-Fusion BioBrick assembly and re-engineering SC Sleight, BA Bartley, JA Lieviant, HM Sauro Nucleic acids research 38 (8), 2624-2636, 2010	155	2010
Designing and engineering evolutionary robust genetic circuits SC Sleight, BA Bartley, JA Lieviant, HM Sauro Journal of biological engineering 4 (1), 12, 2010	148	2010
Metabolic control and its analysis: extensions to the theory and matrix method HM SAURO, JR SMALL, DA FELL European journal of biochemistry 165 (1), 215-221, 1987	146	1987
33 JARNAC: a system for interactive metabolic analysis HM Sauro	142	2000
Minimum information about a simulation experiment (MIASE) D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ... PLoS computational biology 7 (4), e1001122, 2011	129	2011
The ERATO Systems Biology Workbench: enabling interaction and exchange between software tools for computational biology M Hucka, A Finney, HM Sauro, H Bolouri, J Doyle, H Kitano Biocomputing 2002, 450-461, 2001	113	2001
Enzyme kinetics for systems biology HM Sauro Future Skill Software, 2011	106	2011
Standard biological parts knowledgebase M Galdzicki, C Rodriguez, D Chandran, HM Sauro, JH Gennari PloS one 6 (2), e17005, 2011	102	2011

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