Mohammed Alser
Title
Cited by
Cited by
Year
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies
JS Kim, DS Cali, H Xin, D Lee, S Ghose, M Alser, H Hassan, O Ergin, ...
BMC genomics 19 (2), 23-40, 2018
642018
GateKeeper: A New Hardware Architecture for Accelerating Pre-Alignment in DNA Short Read Mapping
M Alser, H Hassan, H Xin, O Ergin, O Mutlu, C Alkan
Bioinformatics, 2017
612017
Shouji: a fast and efficient pre-alignment filter for sequence alignment
M Alser, H Hassan, A Kumar, O Mutlu, C Alkan
Bioinformatics 35 (21), 4255-4263, 2019
262019
MAGNET: understanding and improving the accuracy of genome pre-alignment filtering
M Alser, O Mutlu, C Alkan
arXiv preprint arXiv:1707.01631, 2017
162017
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm
C Firtina, JS Kim, M Alser, D Senol Cali, AE Cicek, C Alkan, O Mutlu
Bioinformatics 36 (12), 3669-3679, 2020
11*2020
Design and modeling of low-power clockless serial link for data communication systems
MH Alser, MM Assaad
2011 National Postgraduate Conference, 1-5, 2011
102011
GRIM-Filter: fast seed filtering in read mapping using emerging memory technologies
JS Kim, D Senol, H Xin, D Lee, S Ghose, M Alser, H Hassan, O Ergin, ...
arXiv preprint arXiv:1708.04329, 2017
92017
Techniques for Reducing the Connected-Standby Energy Consumption of Mobile Devices
J Haj-Yahya, Y Sazeides, M Alser, E Rotem, O Mutlu
2020 IEEE International Symposium on High Performance Computer Architecture …, 2020
82020
An FPGA-based design and implementation of an all-digital serializer for inter module communication in SoC
M Assaad, M Alser
IEICE Electronics Express 8 (23), 2017-2023, 2011
82011
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
DS Cali, GS Kalsi, Z Bingöl, C Firtina, L Subramanian, JS Kim, ...
2020 53rd Annual IEEE/ACM International Symposium on Microarchitecture …, 2020
72020
SneakySnake: A fast and accurate universal genome pre-alignment filter for CPUs, GPUs, and FPGAs
M Alser, T Shahroodi, J Gómez-Luna, C Alkan, O Mutlu
arXiv preprint arXiv:1910.09020, 2019
72019
Genome read in-memory (GRIM) filter: Fast location filtering in DNA read mapping using emerging memory technologies
J Kim, D Senol, H Xin, D Lee, M Alser, H Hassan, O Ergin, C Alkan, ...
Pacific Symp. Biocomputing, 2017
72017
Accelerating genome analysis: a primer on an ongoing journey
M Alser, Z Bingöl, DS Cali, J Kim, S Ghose, C Alkan, O Mutlu
IEEE Micro 40 (5), 65-75, 2020
62020
SysScale: Exploiting multi-domain dynamic voltage and frequency scaling for energy efficient mobile processors
J Haj-Yahya, M Alser, J Kim, AG Yağlıkçı, N Vijaykumar, E Rotem, O Mutlu
2020 ACM/IEEE 47th Annual International Symposium on Computer Architecture …, 2020
62020
NATSA: A Near-Data Processing Accelerator for Time Series Analysis
I Fernandez, R Quislant, E Gutiérrez, O Plata, C Giannoula, M Alser, ...
2020 IEEE 38th International Conference on Computer Design (ICCD), 120-129, 2020
52020
Technology dictates algorithms: Recent developments in read alignment
M Alser, J Rotman, K Taraszka, H Shi, PI Baykal, HT Yang, V Xue, ...
arXiv preprint arXiv:2003.00110, 2020
52020
Can you Really Anonymize the Donors of Genomic Data in Today˘s Digital World?
M Alser, N Almadhoun, A Nouri, C Alkan, E Ayday
Data Privacy Management, and Security Assurance, 237-244, 2015
5*2015
MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples
N LaPierre, S Mangul, M Alser, I Mandric, NC Wu, D Koslicki, E Eskin
BMC genomics 20 (5), 1-10, 2019
42019
Design and fpga implementation of pll-based quarter-rate clock and data recovery circuit
MH Alser, M Assaad, FA Hussin, I Yohannes
2012 4th International Conference on Intelligent and Advanced Systems …, 2012
42012
Design of an all-digital synchronized frequency multiplier based on a dual-loop (D/FLL) architecture
M Assaad, MH Alser
VLSI Design 2012, 2012
42012
The system can't perform the operation now. Try again later.
Articles 1–20