Athanassios Stavrakoudis
Athanassios Stavrakoudis
Assist. Prof. in Computer Simulation, University of Ioannina
Verified email at uoi.gr - Homepage
TitleCited byYear
Synthesis of a proline-rich [60] fullerene peptide with potential biological activity
P Sofou, Y Elemes, E Panou-Pomonis, A Stavrakoudis, V Tsikaris, ...
Tetrahedron 60 (12), 2823-2828, 2004
572004
Enhancing PSO methods for global optimization
IG Tsoulos, A Stavrakoudis
Applied Mathematics and Computation 216 (10), 2988-3001, 2010
522010
On locating all roots of systems of nonlinear equations inside bounded domain using global optimization methods
IG Tsoulos, A Stavrakoudis
Nonlinear Analysis: Real World Applications 11 (4), 2465-2471, 2010
482010
Molecular dynamics simulation of antimicrobial peptide arenicin‐2: ‚‐Hairpin stabilization by noncovalent interactions
A Stavrakoudis, IG Tsoulos, ZO Shenkarev, TV Ovchinnikova
Peptide Science 92 (3), 143-155, 2009
362009
The relative orientation of the Arg and Asp side chains defined by a pseudodihedral angle as a key criterion for evaluating the structure–activity relationship of RGD peptides
S Kostidis, A Stavrakoudis, N Biris, D Tsoukatos, C Sakarellos, V Tsikaris
Journal of Peptide Science 10 (8), 494-509, 2004
272004
Eucb: A C++ program for molecular dynamics trajectory analysis
IG Tsoulos, A Stavrakoudis
Computer Physics Communications 182 (3), 834-841, 2011
232011
Computational screening of branched cyclic peptide motifs as potential enzyme mimetics
A Stavrakoudis, S Makropoulou, V Tsikaris, M Sakarellos‐Daitsiotis, ...
Journal of Peptide Science 9 (3), 145-155, 2003
182003
A three‐residue cyclic scaffold of non‐RGD containing peptide analogues as platelet aggregation inhibitors: Design, synthesis, and structure–function relationships
A Stavrakoudis, G Bizos, D Eleftheriadis, A Kouki, E Panou‐Pomonis, ...
Biopolymers 56 (1), 20-26, 2000
172000
Conformational flexibility in designing peptides for immunology: The molecular dynamics approach
A Stavrakoudis
Current Computer-Aided Drug Design 6 (3), 207-222, 2010
162010
Molecular dynamics simulations of BcZBP, a deacetylase from Bacillus cereus: active site loops determine substrate accessibility and specificity
VE Fadouloglou, A Stavrakoudis, V Bouriotis, M Kokkinidis, NM Glykos
Journal of Chemical Theory and Computation 5 (12), 3299-3311, 2009
122009
Molecular dynamics simulations of the TSSPSAD peptide antigen in free and bound with CAMPATH-1H Fab antibody states: The importance of the ‚-turn conformation
VA Tatsis, IG Tsoulos, A Stavrakoudis
International Journal of Peptide Research and Therapeutics 15 (1), 1-9, 2009
122009
T‐cell epitopes of the La/SSB autoantigen: Prediction based on the homology modeling of HLA‐DQ2/DQ7 with the insulin‐B peptide/HLA‐DQ8 complex
A Kosmopoulou, M Vlassi, A Stavrakoudis, C Sakarellos, ...
Journal of computational chemistry 27 (9), 1033-1044, 2006
122006
Design, synthesis and catalytic activity of a serine protease synthetic model
A Stavrakoudis, IN Demetropoulos, C Sakarellos, M Sakarellos-Daitsiotis, ...
International Journal of Peptide Research and Therapeutics 4 (4), 481-487, 1997
121997
Price Dependence between Different Beef Cuts and Quality Grades: A Copula Approach at the Retail Level for the US Beef Industry
D Panagiotou, A Stavrakoudis
Journal of Agricultural & Food Industrial Organization 14 (1), 121-131, 2016
102016
Insights into the structure of the LC13 TCR/HLA-B8-EBV peptide complex with molecular dynamics simulations
A Stavrakoudis
Cell biochemistry and biophysics 60 (3), 283-295, 2011
102011
A disulfide linked model of the complement protein C8„ complexed with C8Š indel peptide
A Stavrakoudis
Journal of Molecular Modeling 15 (2), 165-171, 2009
102009
The Ac–RGD–NH2 peptide as a probe of slow conformational exchange of short linear peptides in DMSO
N Biris, A Stavrakoudis, AS Politou, E Mikros, M Sakarellos‐Daitsiotis, ...
Biopolymers 69 (1), 72-86, 2003
102003
Biometric Digital Health Technology for Measuring Motor Function in ParkinsonĘs disease: Results from a feasibility and patient satisfaction study
G Mitsi, EU Mendoza, BD Wissel, E Barbopoulou, AK Dwivedi, I Tsoulos, ...
Frontiers in Neurology 8, 273, 2017
92017
Molecular Dynamics as a pattern recognition tool: An automated process detects peptides that preserve the 3D arrangement of Trypsin's Active Site
VA Tatsis, A Stavrakoudis, IN Demetropoulos
Biophysical chemistry 133 (1), 36-44, 2008
92008
Cis–trans isomerization of the Epstein–Barr virus determinant peptide EENLLDFVRF after the DM1 TCR recognition of the HLA-B* 4405/peptide complex
A Stavrakoudis
FEBS letters 585 (3), 485-491, 2011
72011
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Articles 1–20