Eduardo Rocha
Cited by
Cited by
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
F Kunst, N Ogasawara, I Moszer, AM Albertini, GO Alloni, V Azevedo, ...
Nature 390 (6657), 249-256, 1997
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
M Touchon, C Hoede, O Tenaillon, V Barbe, S Baeriswyl, P Bidet, ...
PLoS genetics 5 (1), e1000344, 2009
Mobility of plasmids
C Smillie, MP Garcillán-Barcia, MV Francia, EPC Rocha, F de la Cruz
Microbiology and Molecular Biology Reviews 74 (3), 434-452, 2010
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
D Couvin, A Bernheim, C Toffano-Nioche, M Touchon, J Michalik, ...
Nucleic acids research 46 (W1), W246-W251, 2018
Base composition bias might result from competition for metabolic resources
EPC Rocha, A Danchin
TRENDS in Genetics 18 (6), 291-294, 2002
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes
TJ Treangen, EPC Rocha
PLoS genetics 7 (1), e1001284, 2011
Comparisons of dN/dS are time dependent for closely related bacterial genomes
EPC Rocha, JM Smith, LD Hurst, MTG Holden, JE Cooper, NH Smith, ...
Journal of theoretical biology 239 (2), 226-235, 2006
Uncovering Listeria monocytogenes hypervirulence by harnessing its biodiversity
MM Maury, YH Tsai, C Charlier, M Touchon, V Chenal-Francisque, ...
Nature genetics 48 (3), 308-313, 2016
Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
A Moura, A Criscuolo, H Pouseele, MM Maury, A Leclercq, C Tarr, ...
Nature microbiology 2 (2), 1-10, 2016
Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization
EPC Rocha
Genome research 14 (11), 2279-2286, 2004
Coping with cold: the genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
C Médigue, E Krin, G Pascal, V Barbe, A Bernsel, PN Bertin, F Cheung, ...
Genome research 15 (10), 1325-1335, 2005
The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients
MTG Holden, HMB Seth-Smith, LC Crossman, M Sebaihia, SD Bentley, ...
Journal of bacteriology 191 (1), 261-277, 2009
Comparative and evolutionary analysis of the bacterial homologous recombination systems
EPC Rocha, E Cornet, B Michel
PLoS genetics 1 (2), e15, 2005
The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation
J Guglielmini, L Quintais, MP Garcillán-Barcia, F de la Cruz, EPC Rocha
PLoS genetics 7 (8), e1002222, 2011
The complete genome sequence of the murine respiratory pathogen Mycoplasma pulmonis
I Chambaud, R Heilig, S Ferris, V Barbe, D Samson, F Galisson, I Moszer, ...
Nucleic acids research 29 (10), 2145-2153, 2001
The organization of the bacterial genome
EPC Rocha
Annual review of genetics 42, 211-233, 2008
The systemic imprint of growth and its uses in ecological (meta) genomics
S Vieira-Silva, EPC Rocha
PLoS genetics 6 (1), e1000808, 2010
An analysis of determinants of amino acids substitution rates in bacterial proteins
EPC Rocha, A Danchin
Molecular biology and evolution 21 (1), 108-116, 2004
The replication-related organization of bacterial genomes
EPC Rocha
Microbiology 150 (6), 1609-1627, 2004
What traits are carried on mobile genetic elements, and why?
DJ Rankin, EPC Rocha, SP Brown
Heredity 106 (1), 1-10, 2011
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