Emmanouil (Manolis) Maragkakis

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Panagiotis AlexiouERA Chair, University of MaltaVerified email at um.edu.mt
Artemis HatzigeorgiouProfessor of Bioinformatics, University of ThessalyVerified email at inf.uth.gr
Martin ReczkoBiomedical Sciences Research Center Alexander FlemingVerified email at fleming.gr
Zissimos MourelatosProfessor of Pathology & Laboratory Medicine, University of Pennsylvania, Perelman School of MedicineVerified email at uphs.upenn.edu
Theodore DalamagasAthena Research CenterVerified email at imis.athena-innovation.gr
Thanasis VergoulisIMSI, "Athena" RC, GreeceVerified email at athenarc.gr
Nectarios KozirisProfessor, fmr Dean of the School of Electrical & Computer Engineering, NTUAVerified email at cslab.ece.ntua.gr
George GeorgakilasUniversity of Pennsylvania School of MedicineVerified email at pennmedicine.upenn.edu
Anastassios (Anastasios) VourekasAssistant Professor at Louisiana State UniversityVerified email at lsu.edu
Kornilios KourtisIsovalentVerified email at isovalent.com
Timos SellisAthena Research CenterVerified email at athenarc.gr
Ioannis S VlachosSpatial Technologies Unit, Harvard Medical School, BIDMC, Broad Institute of MIT & HarvardVerified email at bidmc.harvard.edu
Vangelis KoukisComputing Systems Laboratory, National Technical University of AthensVerified email at cslab.ece.ntua.gr
Panayiotis TsanakasProfessor, Dean of the School of Electrical and Computer Engineering, National Technical UniversityVerified email at cs.ntua.gr
Giorgos GiannopoulosImsi Institute, Athena R.C.Verified email at athenarc.gr
Maria D. Paraskevopoulou, PhDDirector/Group Lead, Computational Biology, Gastroenterology and Immunology, Takeda PharmaceuticalsVerified email at takeda.com
Nikos KostoulasDeveloper at Imis Athena RCVerified email at imis.athena-innovation.gr
Yohei KirinoThomas Jefferson UniversityVerified email at jefferson.edu
Ivo GrosseProfessor of Bioinformatics, Martin Luther University Halle-WittenbergVerified email at informatik.uni-halle.de
Brian D. GregoryProfessor of Biology, University of PennsylavaniaVerified email at sas.upenn.edu

Emmanouil (Manolis) Maragkakis

Other namesManolis Maragkakis

Stadtman Principal Investigator, NIA/NIH

Verified email at nih.gov - Homepage

Genomics RNA Aging Neurodegeneration Machine learning


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DIANA-microT web server: elucidating microRNA functions through target prediction M Maragkakis, M Reczko, VA Simossis, P Alexiou, GL Papadopoulos, ... Nucleic acids research 37 (suppl_2), W273-W276, 2009	713	2009
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support T Vergoulis, IS Vlachos, P Alexiou, G Georgakilas, M Maragkakis, ... Nucleic acids research 40 (D1), D222-D229, 2012	662	2012
Functional microRNA targets in protein coding sequences M Reczko, M Maragkakis, P Alexiou, I Grosse, AG Hatzigeorgiou Bioinformatics 28 (6), 771-776, 2012	622	2012
DIANA miRPath v. 2.0: investigating the combinatorial effect of microRNAs in pathways IS Vlachos, N Kostoulas, T Vergoulis, G Georgakilas, M Reczko, ... Nucleic acids research 40 (W1), W498-W504, 2012	621	2012
Accurate microRNA target prediction correlates with protein repression levels M Maragkakis, P Alexiou, GL Papadopoulos, M Reczko, T Dalamagas, ... BMC bioinformatics 10, 1-10, 2009	432	2009
Lost in translation: an assessment and perspective for computational microRNA target identification P Alexiou, M Maragkakis, GL Papadopoulos, M Reczko, ... Bioinformatics 25 (23), 3049-3055, 2009	426	2009
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs MD Paraskevopoulou, G Georgakilas, N Kostoulas, M Reczko, ... Nucleic acids research 41 (D1), D239-D245, 2013	371	2013
DIANA-mirPath: Integrating human and mouse microRNAs in pathways GL Papadopoulos, P Alexiou, M Maragkakis, M Reczko, ... Bioinformatics 25 (15), 1991-1993, 2009	337	2009
Editing of Epstein-Barr virus-encoded BART6 microRNAs controls their dicer targeting and consequently affects viral latency H Iizasa, BE Wulff, NR Alla, M Maragkakis, M Megraw, A Hatzigeorgiou, ... Journal of Biological Chemistry 285 (43), 33358-33370, 2010	299	2010
Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis A Vourekas, Q Zheng, P Alexiou, M Maragkakis, Y Kirino, BD Gregory, ... Nature structural & molecular biology 19 (8), 773-781, 2012	281	2012
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association M Maragkakis, T Vergoulis, P Alexiou, M Reczko, K Plomaritou, M Gousis, ... Nucleic acids research 39 (suppl_2), W145-W148, 2011	180	2011
The RNA helicase MOV10L1 binds piRNA precursors to initiate piRNA processing A Vourekas, K Zheng, Q Fu, M Maragkakis, P Alexiou, J Ma, RS Pillai, ... Genes & development 29 (6), 617-629, 2015	168	2015
Sequence-dependent but not sequence-specific piRNA adhesion traps mRNAs to the germ plasm A Vourekas, P Alexiou, N Vrettos, M Maragkakis, Z Mourelatos Nature 531 (7594), 390-394, 2016	135	2016
FUS regulates genes coding for RNA-binding proteins in neurons by binding to their highly conserved introns T Nakaya, P Alexiou, M Maragkakis, A Chang, Z Mourelatos Rna 19 (4), 498-509, 2013	135	2013
A MicroRNA precursor surveillance system in quality control of MicroRNA synthesis X Liu, Q Zheng, N Vrettos, M Maragkakis, P Alexiou, BD Gregory, ... Molecular cell 55 (6), 868-879, 2014	104	2014
The DIANA-mirExTra web server: from gene expression data to microRNA function P Alexiou, M Maragkakis, GL Papadopoulos, VA Simmosis, L Zhang, ... PloS one 5 (2), e9171, 2010	95	2010
Mitochondrial protein BmPAPI modulates the length of mature piRNAs S Honda, Y Kirino, M Maragkakis, P Alexiou, A Ohtaki, R Murali, ... Rna 19 (10), 1405-1418, 2013	93	2013
Retention of CD19 intron 2 contributes to CART-19 resistance in leukemias with subclonal frameshift mutations in CD19 M Asnani, KE Hayer, AS Naqvi, S Zheng, SY Yang, D Oldridge, F Ibrahim, ... Leukemia 34 (4), 1202-1207, 2020	91	2020
Amyotrophic Lateral Sclerosis associated FUS mutation shortens mitochondria and induces neurotoxicity T Nakaya, M Maragkakis Scientific reports 8 (1), 15575, 2018	83	2018
Mis-spliced transcripts generate de novo proteins in TDP-43–related ALS/FTD S Seddighi, YA Qi, AL Brown, OG Wilkins, C Bereda, C Belair, YJ Zhang, ... Science Translational Medicine 16 (734), eadg7162, 2024	82	2024

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