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Xinghua (Mindy) Shi
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Year
A global reference for human genetic variation
1000 Genomes Project Consortium
Nature 526 (7571), 68, 2015
108882015
A map of human genome variation from population scale sequencing
1000 Genomes Project Consortium
Nature 467 (7319), 1061, 2010
80972010
An integrated map of genetic variation from 1,092 human genomes.
GR Abecasis, A Auton, LD Brooks, MA DePristo, RM Durbin, ...
Nature 491 (7422), 56, 2012
7589*2012
An integrated map of structural variation in 2,504 human genomes
PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ...
Nature 526 (7571), 75-81, 2015
18612015
Mapping copy number variation by population-scale genome sequencing
RE Mills, K Walter, C Stewart, RE Handsaker, K Chen, C Alkan, A Abyzov, ...
Nature 470 (7332), 59-65, 2011
11742011
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1-16, 2019
5032019
Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants
D Pinto, K Darvishi, X Shi, D Rajan, D Rigler, T Fitzgerald, AC Lionel, ...
Nature biotechnology 29 (6), 512-520, 2011
4422011
A survey of social-based routing in delay tolerant networks: Positive and negative social effects
Y Zhu, B Xu, X Shi, Y Wang
IEEE Communications Surveys & Tutorials 15 (1), 387-401, 2012
3982012
Integrative annotation of variants from 1092 humans: application to cancer genomics
E Khurana, Y Fu, V Colonna, XJ Mu, HM Kang, T Lappalainen, A Sboner, ...
Science 342 (6154), 1235587, 2013
3972013
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel
O Delaneau, J Marchini
Nature communications 5 (1), 1-9, 2014
3612014
Haplotype-resolved diverse human genomes and integrated analysis of structural variation
P Ebert, PA Audano, Q Zhu, B Rodriguez-Martin, D Porubsky, MJ Bonder, ...
Science 372 (6537), eabf7117, 2021
1802021
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation
LK McNeil, C Reich, RK Aziz, D Bartels, M Cohoon, T Disz, RA Edwards, ...
Nucleic acids research 35 (suppl_1), D347-D353, 2007
1132007
Extensive genetic diversity and substructuring among zebrafish strains revealed through copy number variant analysis
KH Brown, KP Dobrinski, AS Lee, O Gokcumen, RE Mills, X Shi, ...
Proceedings of the National Academy of Sciences 109 (2), 529-534, 2012
1012012
A deep auto-encoder model for gene expression prediction
R Xie, J Wen, A Quitadamo, J Cheng, X Shi
BMC genomics 18 (9), 39-49, 2017
812017
Refinement of primate copy number variationhotspots identifies candidate genomic regions evolving under positive selection
O Gokcumen, PL Babb, RC Iskow, Q Zhu, X Shi, RE Mills, I Ionita-Laza, ...
Genome biology 12 (5), 1-11, 2011
652011
An overview of human genetic privacy
X Shi, X Wu
Annals of the New York Academy of Sciences 1387 (1), 61-72, 2017
602017
Effects of short indels on protein structure and function in human genomes
M Lin, S Whitmire, J Chen, A Farrel, X Shi, J Guo
Scientific reports 7 (1), 1-9, 2017
592017
A Two-Graph Guided Multi-task Lasso Approach for eQTL Mapping
X Chen, X Shi, X Xu, Z Wang, R Mills, C Lee, J Xu
The fifteenth international conference on Artificial Intelligence and …, 2012
572012
DeepDSC: a deep learning method to predict drug sensitivity of cancer cell lines
M Li, Y Wang, R Zheng, X Shi, Y Li, FX Wu, J Wang
IEEE/ACM transactions on computational biology and bioinformatics 18 (2 …, 2019
412019
Data collection capacity of random-deployed wireless sensor networks
S Chen, Y Wang, XY Li, X Shi
GLOBECOM 2009-2009 IEEE Global Telecommunications Conference, 1-6, 2009
352009
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