Michael Hucka

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	All	Since 2016
Citations	14173	5188
h-index	42	29
i10-index	72	49

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Herbert M SauroUniversity of WashingtonVerified email at u.washington.edu
Hamid BolouriBenaroya Research InstituteVerified email at BenaroyaResearch.org
Nicolas RodriguezSenior Software Systems and Database Architect, Babraham InstituteVerified email at babraham.ac.uk
Dagmar WaltemathProfessor of Medical InformaticsVerified email at uni-greifswald.de
John DoyleCaltechVerified email at caltech.edu
Hiroaki KitanoThe Systems Biology Institute, Director / Sony Computer Science Laboratories, Inc., President and CEO / Okinawa Institute of Science and Technology, ProfessorVerified email at sbi.jp
David Phillip NickersonAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Chris MyersUniversity of UtahVerified email at ece.utah.edu
Bruce E. ShapiroCalifornia State University, Northridge, RetiredVerified email at csun.edu
Frank T. BergmannBioQUANT/COS, Heidelberg University, Heidelberg, GermanyVerified email at caltech.edu
Snoep JLStellenbosch University; Manchester University; Vrije Universiteit AmsterdamVerified email at sun.ac.za
Andreas DrägerJunior Professor for Computational Systems Biology of Infection and Antimicrobial-ResistanceVerified email at informatik.uni-tuebingen.de
Stefan HoopsResearch Associate Professor, Biocomplexity Institute & Initiative, University of VirginiaVerified email at virginia.edu
Maria SchilstraPrincipal Laboratory ScientistVerified email at crick.ac.uk
Martin GolebiewskiHITS gGmbH, Heidelberg (Germany)Verified email at h-its.org
John LairdProfessor of Computer Science and Engineering, University of MichiganVerified email at umich.edu
Darren WilkinsonProfessor of Stochastic Modelling, Newcastle University, U.K.Verified email at ncl.ac.uk
Lu LiPostdoctoral researcher, AstraZeneca, UKVerified email at astrazeneca.com
Brett G. OlivierVU AmsterdamVerified email at vu.nl
Falk SchreiberProfessor, University of Konstanz and Monash UniversityVerified email at uni-konstanz.de

Michael Hucka

California Institute of Technology

Verified email at caltech.edu - Homepage

Systems biology standards cognitive science data archiving machine learning


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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ... Bioinformatics 19 (4), 524-531, 2003	3354	2003
A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013	963	2013
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems N Le Novère, B Bornstein, A Broicher, M Courtot, M Donizelli, H Dharuri, ... Nucleic Acids Research 34 (suppl 1), D689-D691, 2006	874	2006
The systems biology graphical notation N Le Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009	867	2009
The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010	635	2010
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008	611	2008
Minimum information requested in the annotation of biochemical models (MIRIAM) N Le Novère, A Finney, M Hucka, US Bhalla, F Campagne, ... Nature biotechnology 23 (12), 1509-1515, 2005	607	2005
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models C Li, M Donizelli, N Rodriguez, H Dharuri, L Endler, V Chelliah, L Li, E He, ... BMC systems biology 4 (1), 92, 2010	577	2010
Rules for modeling signal-transduction systems WS Hlavacek, JR Faeder, ML Blinov, RG Posner, M Hucka, W Fontana Sci STKE 344, 2006, 2006	422	2006
LibSBML: an API library for SBML BJ Bornstein, SM Keating, A Jouraku, M Hucka Bioinformatics 24 (6), 880, 2008	396	2008
Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration HM Sauro, M Hucka, A Finney, C Wellock, H Bolouri, J Doyle, H Kitano Omics A Journal of Integrative Biology 7 (4), 355-372, 2003	332	2003
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019	307	2019
Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project M Hucka, A Finney, BJ Bornstein, SM Keating, BE Shapiro, J Matthews, ... Systems Biology 1 (1), 41-53, 2004	289	2004
Systems biology markup language: Level 2 and beyond A Finney, M Hucka Biochemical Society Transactions 31 (6), 1472-1473, 2003	261	2003
BioModels: ten-year anniversary V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ... Nucleic acids research 43 (D1), D542-D548, 2015	260	2015
Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 2011	253	2011
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ... BMC systems biology 5 (1), 1-10, 2011	218	2011
Towards NeuroML: model description methods for collaborative modelling in neuroscience NH Goddard, M Hucka, F Howell, H Cornelis, K Shankar, D Beeman Philosophical Transactions of the Royal Society of London. Series B …, 2001	162	2001
SBMLToolbox: an SBML toolbox for MATLAB users SM Keating, BJ Bornstein, A Finney, M Hucka Bioinformatics 22 (10), 1275-1277, 2006	157	2006
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core M Hucka, FT Bergmann, S Hoops, SM Keating, S Sahle, JC Schaff, ... Nature Publishing Group, 2010	149*	2010

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