Michael Hucka

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Sarah KeatingUCLVerified email at ucl.ac.uk
Herbert M SauroUniversity of WashingtonVerified email at u.washington.edu
Hamid BolouriBenaroya Research InstituteVerified email at BenaroyaResearch.org
Dagmar WaltemathProfessor of Medical InformaticsVerified email at uni-greifswald.de
Nicolas RodriguezSenior Software Systems and Database Architect, Babraham InstituteVerified email at babraham.ac.uk
John DoyleCaltechVerified email at caltech.edu
David Phillip NickersonAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Snoep JLStellenbosch University; Manchester University; Vrije Universiteit AmsterdamVerified email at sun.ac.za
Chris MyersUniversity of UtahVerified email at ece.utah.edu
Frank T. BergmannBioQUANT/COS, Heidelberg University, Heidelberg, GermanyVerified email at caltech.edu
Hiroaki KitanoThe Systems Biology Institute, Director / Sony Computer Science Laboratories, Inc., President and CEO / Okinawa Institute of Science and Technology, ProfessorVerified email at sbi.jp
Bruce E. ShapiroCalifornia State University, Northridge, RetiredVerified email at csun.edu
Andreas DrägerJunior Professor for Computational Systems Biology of Infection and Antimicrobial-ResistanceVerified email at informatik.uni-tuebingen.de
Stefan HoopsResearch Associate Professor, Biocomplexity Institute & Initiative, University of VirginiaVerified email at virginia.edu
Maria SchilstraPrincipal Laboratory ScientistVerified email at crick.ac.uk
Martin GolebiewskiHITS gGmbH, Heidelberg (Germany)Verified email at h-its.org
Darren WilkinsonProfessor of Stochastic Modelling, Newcastle University, U.K.Verified email at ncl.ac.uk
Brett G. OlivierVU AmsterdamVerified email at vu.nl
Lu LiPostdoctoral researcher, AstraZeneca, UKVerified email at astrazeneca.com
Falk SchreiberProfessor, University of Konstanz and Monash UniversityVerified email at uni-konstanz.de

Michael Hucka

California Institute of Technology

Verified email at caltech.edu - Homepage

knowledge preservation machine learning handwriting recognition systems biology standards


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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ... Bioinformatics 19 (4), 524-531, 2003	3489	2003
A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013	1006	2013
The systems biology graphical notation N Le Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009	906	2009
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems N Le Novère, B Bornstein, A Broicher, M Courtot, M Donizelli, H Dharuri, ... Nucleic Acids Research 34 (suppl 1), D689-D691, 2006	899	2006
The BioPAX community standard for pathway data sharing E Demir, MP Cary, S Paley, K Fukuda, C Lemer, I Vastrik, G Wu, ... Nature biotechnology 28 (9), 935-942, 2010	665	2010
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008	635	2008
Minimum information requested in the annotation of biochemical models (MIRIAM) N Le Novère, A Finney, M Hucka, US Bhalla, F Campagne, ... Nature biotechnology 23 (12), 1509-1515, 2005	628	2005
BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models C Li, M Donizelli, N Rodriguez, H Dharuri, L Endler, V Chelliah, L Li, E He, ... BMC systems biology 4 (1), 92, 2010	599	2010
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019	430	2019
Rules for modeling signal-transduction systems WS Hlavacek, JR Faeder, ML Blinov, RG Posner, M Hucka, W Fontana Sci STKE 344, 2006, 2006	425	2006
LibSBML: an API library for SBML BJ Bornstein, SM Keating, A Jouraku, M Hucka Bioinformatics 24 (6), 880, 2008	420	2008
Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration HM Sauro, M Hucka, A Finney, C Wellock, H Bolouri, J Doyle, H Kitano Omics A Journal of Integrative Biology 7 (4), 355-372, 2003	334	2003
Evolving a lingua franca and associated software infrastructure for computational systems biology: the Systems Biology Markup Language (SBML) project M Hucka, A Finney, BJ Bornstein, SM Keating, BE Shapiro, J Matthews, ... Systems Biology 1 (1), 41-53, 2004	300	2004
BioModels: ten-year anniversary V Chelliah, N Juty, I Ajmera, R Ali, M Dumousseau, M Glont, M Hucka, ... Nucleic acids research 43 (D1), D542-D548, 2015	279	2015
Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 2011	270	2011
Systems biology markup language: Level 2 and beyond A Finney, M Hucka Biochemical Society Transactions 31 (6), 1472-1473, 2003	262	2003
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ... BMC systems biology 5 (1), 1-10, 2011	231	2011
Towards NeuroML: model description methods for collaborative modelling in neuroscience NH Goddard, M Hucka, F Howell, H Cornelis, K Shankar, D Beeman Philosophical Transactions of the Royal Society of London. Series B …, 2001	166	2001
SBMLToolbox: an SBML toolbox for MATLAB users SM Keating, BJ Bornstein, A Finney, M Hucka Bioinformatics 22 (10), 1275-1277, 2006	160	2006
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core M Hucka, FT Bergmann, S Hoops, SM Keating, S Sahle, JC Schaff, ... Nature Publishing Group, 2010	156*	2010

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