Timothy McPhillips
Timothy McPhillips
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Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines
TM McPhillips, SE McPhillips, HJ Chiu, AE Cohen, AM Deacon, PJ Ellis, ...
Journal of synchrotron radiation 9 (6), 401-406, 2002
Light-induced structural changes in photosynthetic reaction center: implications for mechanism of electron-proton transfer
MHB Stowell, TM McPhillips, DC Rees, SM Soltis, E Abresch, G Feher
Science 276 (5313), 812-816, 1997
Provenance and scientific workflows: challenges and opportunities
SB Davidson, J Freire
Proceedings of the 2008 ACM SIGMOD international conference on Management of …, 2008
Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline
SA Lesley, P Kuhn, A Godzik, AM Deacon, I Mathews, A Kreusch, ...
Proceedings of the National Academy of Sciences 99 (18), 11664-11669, 2002
The first provenance challenge
L Moreau, B Ludäscher, I Altintas, RS Barga, S Bowers, S Callahan, ...
Concurrency and computation: practice and experience 20 (5), 409-418, 2008
Scientific workflow design for mere mortals
T McPhillips, S Bowers, D Zinn, B Ludäscher
Future Generation Computer Systems 25 (5), 541-551, 2009
Scientific workflows: Business as usual?
B Ludäscher, M Weske, T McPhillips, S Bowers
Business Process Management: 7th International Conference, BPM 2009, Ulm …, 2009
Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data
KR Blahnik, L Dou, H O'Geen, T McPhillips, X Xu, AR Cao, S Iyengar, ...
Nucleic acids research 38 (3), e13-e13, 2010
A model for user-oriented data provenance in pipelined scientific workflows
S Bowers, T McPhillips, B Ludäscher, S Cohen, SB Davidson
International Provenance and Annotation Workshop, 133-147, 2006
YesWorkflow: a user-oriented, language-independent tool for recovering workflow information from scripts
T McPhillips, T Song, T Kolisnik, S Aulenbach, K Belhajjame, K Bocinsky, ...
arXiv preprint arXiv:1502.02403, 2015
New paradigm for macromolecular crystallography experiments at SSRL: automated crystal screening and remote data collection
SM Soltis, AE Cohen, A Deacon, T Eriksson, A González, S McPhillips, ...
Acta Crystallographica Section D: Biological Crystallography 64 (12), 1210-1221, 2008
Provenance in collection‐oriented scientific workflows
S Bowers, TM McPhillips, B Ludäscher
Concurrency and Computation: Practice and Experience 20 (5), 519-529, 2008
Scientific Process Automation and Workflow Management.
B Ludäscher, I Altintas, S Bowers, J Cummings, T Critchlow, E Deelman, ...
Scientific Data Management 10 (3), 476-508, 2009
Efficient provenance storage over nested data collections
MK Anand, S Bowers, T McPhillips, B Ludäscher
Proceedings of the 12th International Conference on Extending Database …, 2009
Kepler/pPOD: Scientific workflow and provenance support for assembling the tree of life
S Bowers, T McPhillips, S Riddle, MK Anand, B Ludäscher
International Provenance and Annotation Workshop, 70-77, 2008
Identification of proton transfer pathways in the X-ray crystal structure of the bacterial reaction center from Rhodobacter sphaeroides
EC Abresch, ML Paddock, MHB Stowell, TM McPhillips, HL Axelrod, ...
Photosynthesis Research 55, 119-125, 1998
Collection-oriented scientific workflows for integrating and analyzing biological data
T McPhillips, S Bowers, B Ludäscher
International Workshop on Data Integration in the Life Sciences, 248-263, 2006
Exploring scientific workflow provenance using hybrid queries over nested data and lineage graphs
MK Anand, S Bowers, T McPhillips, B Ludäscher
Scientific and Statistical Database Management: 21st International …, 2009
Crystal structure of thy1, a thymidylate synthase complementing protein from Thermotoga maritima at 2.25 Å resolution
P Kuhn, SA Lesley, II Mathews, JM Canaves, LS Brinen, X Dai, ...
Proteins: Structure, Function, and Bioinformatics 49 (1), 142-145, 2002
An approach for pipelining nested collections in scientific workflows
TM McPhillips, S Bowers
ACM Sigmod Record 34 (3), 12-17, 2005
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