Jason E Stajich
Jason E Stajich
Verified email at ucr.edu - Homepage
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Year
The Bioperl toolkit: Perl modules for the life sciences
JE Stajich, D Block, K Boulez, SE Brenner, SA Chervitz, C Dagdigian, ...
Genome research 12 (10), 1611-1618, 2002
17992002
Reconstructing the early evolution of Fungi using a six-gene phylogeny
TY James, F Kauff, CL Schoch, PB Matheny, V Hofstetter, CJ Cox, G Celio, ...
Nature 443 (7113), 818-822, 2006
17562006
The generic genome browser: a building block for a model organism system database
LD Stein, C Mungall, SQ Shu, M Caudy, M Mangone, A Day, E Nickerson, ...
Genome research 12 (10), 1599-1610, 2002
12782002
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
J Kämper, R Kahmann, M Bölker, LJ Ma, T Brefort, BJ Saville, F Banuett, ...
Nature 444 (7115), 97-101, 2006
11262006
The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics
LD Stein, Z Bao, D Blasiar, T Blumenthal, MR Brent, N Chen, A Chinwalla, ...
PLoS Biol 1 (2), e45, 2003
9922003
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
F Martin, A Aerts, D Ahrén, A Brun, EGJ Danchin, F Duchaussoy, J Gibon, ...
Nature 452 (7183), 88-92, 2008
9512008
A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
JW Spatafora, Y Chang, GL Benny, K Lazarus, ME Smith, ML Berbee, ...
Mycologia 108 (5), 1028-1046, 2016
6202016
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
DA Fitzpatrick, ME Logue, JE Stajich, G Butler
BMC evolutionary biology 6 (1), 99, 2006
5712006
Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak
JA Fraser, SS Giles, EC Wenink, SG Geunes-Boyer, JR Wright, ...
Nature 437 (7063), 1360-1364, 2005
5572005
Ganglioside-induced differentiation-associated protein-1 is mutant in Charcot-Marie-Tooth disease type 4A/8q21
RV Baxter, KB Othmane, JM Rochelle, JE Stajich, C Hulette, ...
Nature genetics 30 (1), 21, 2002
474*2002
Genome sequence of the model mushroom Schizophyllum commune
RA Ohm, JF De Jong, LG Lugones, A Aerts, E Kothe, JE Stajich, ...
Nature biotechnology 28 (9), 957-963, 2010
4302010
Insights into evolution of multicellular fungi from the assembled chromosomes of the mushroom Coprinopsis cinerea (Coprinus cinereus)
JE Stajich, SK Wilke, D Ahrén, CH Au, BW Birren, M Borodovsky, C Burns, ...
Proceedings of the National Academy of Sciences 107 (26), 11889-11894, 2010
3742010
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
CA Lévesque, H Brouwer, L Cano, JP Hamilton, C Holt, E Huitema, ...
Genome biology 11 (7), R73, 2010
3582010
The evolution of mammalian gene families
JP Demuth, T De Bie, JE Stajich, N Cristianini, MW Hahn
PloS one 1 (1), e85, 2006
3212006
The fungi
JE Stajich, ML Berbee, M Blackwell, DS Hibbett, TY James, JW Spatafora, ...
Current Biology 19 (18), R840-R845, 2009
307*2009
Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation
G Janbon, KL Ormerod, D Paulet, EJ Byrnes III, V Yadav, G Chatterjee, ...
PLoS genetics 10 (4), e1004261, 2014
2712014
Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives
TJ Sharpton, JE Stajich, SD Rounsley, MJ Gardner, JR Wortman, ...
Genome Research 19 (10), 1722-1731, 2009
2612009
Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data
EB Rosenblum, TY James, KR Zamudio, TJ Poorten, D Ilut, D Rodriguez, ...
Proceedings of the National Academy of Sciences 110 (23), 9385-9390, 2013
2582013
FungiDB: an integrated functional genomics database for fungi
JE Stajich, T Harris, BP Brunk, J Brestelli, S Fischer, OS Harb, ...
Nucleic acids research 40 (D1), D675-D681, 2012
2492012
Estimating the tempo and mode of gene family evolution from comparative genomic data
MW Hahn, T De Bie, JE Stajich, C Nguyen, N Cristianini
Genome Research 15 (8), 1153-1160, 2005
2362005
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