Sara C. Madeira
Sara C. Madeira
Associate Professor,LASIGE,Departamento de Informática,Faculdade de Ciências,Universidade de Lisboa
Verified email at fc.ul.pt - Homepage
Title
Cited by
Cited by
Year
Biclustering algorithms for biological data analysis: a survey
SC Madeira, AL Oliveira
IEEE/ACM transactions on computational biology and bioinformatics 1 (1), 24-45, 2004
24772004
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
I Medina, J Carbonell, L Pulido, SC Madeira, S Goetz, A Conesa, ...
Nucleic acids research 38 (suppl_2), W210-W213, 2010
3582010
The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae
MC Teixeira, PT Monteiro, JF Guerreiro, JP Gonçalves, NP Mira, ...
Nucleic acids research 42 (D1), D161-D166, 2014
2592014
YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
D Abdulrehman, PT Monteiro, MC Teixeira, NP Mira, AB Lourenco, ...
Nucleic acids research 39 (suppl_1), D136-D140, 2010
2202010
Identification of regulatory modules in time series gene expression data using a linear time biclustering algorithm
SC Madeira, MC Teixeira, I Sa-Correia, AL Oliveira
IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (1), 153-165, 2008
1202008
BiGGEsTS: integrated environment for biclustering analysis of time series gene expression data
JP Gonçalves, SC Madeira, AL Oliveira
BMC research notes 2 (1), 1-11, 2009
742009
PINTA: a web server for network-based gene prioritization from expression data
D Nitsch, LC Tranchevent, JP Goncalves, JK Vogt, SC Madeira, Y Moreau
Nucleic acids research 39 (suppl_2), W334-W338, 2011
702011
A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series
SC Madeira, AL Oliveira
Algorithms for Molecular Biology 4 (1), 1-39, 2009
702009
BicPAM: Pattern-based biclustering for biomedical data analysis
R Henriques, SC Madeira
Algorithms for Molecular Biology 9 (1), 1-30, 2014
682014
A linear time biclustering algorithm for time series gene expression data
SC Madeira, AL Oliveira
Algorithms in Bioinformatics, 39-52, 2005
662005
A structured view on pattern mining-based biclustering
R Henriques, C Antunes, SC Madeira
Pattern Recognition 48 (12), 3941-3958, 2015
552015
BicSPAM: Flexible biclustering using sequential patterns
R Henriques, SC Madeira
BMC bioinformatics 15 (1), 130, 2014
452014
BicPAMS: Software for biological data analysis with pattern-based biclustering
R Henriques, FL Ferreira, SC Madeira
BMC Bioinformatics 18 (1), 82, 2017
422017
Triclustering algorithms for three-dimensional data analysis: A comprehensive survey
R Henriques, SC Madeira
ACM Computing Surveys (CSUR) 51 (5), 95, 2018
402018
BicNET: flexible module discovery in large-scale biological networks using biclustering
R Henriques, SC Madeira
Algorithms for Molecular Biology 11 (1), 1-30, 2016
352016
Interactogeneous: disease gene prioritization using heterogeneous networks and full topology scores
JP Gonçalves, AP Francisco, Y Moreau, SC Madeira
PloS one 7 (11), e49634, 2012
342012
Predicting progression of mild cognitive impairment to dementia using neuropsychological data: A supervised learning approach using time windows
T Pereira, L Lemos, S Cardoso, D Silva, A Rodrigues, I Santana, ...
BMC Medical Informatics and Decision Making 17 (1), 110, 2017
312017
Comparison of target selection methods in direct marketing
S Madeira, JM Sousa
European Symposium on Intelligent Technologies, Hybrid Systems and their …, 2002
292002
An efficient biclustering algorithm for finding genes with similar patterns in time-series expression data
SC Madeira, AL Oliveira
Proceedings Of The 5th Asia-Pacific Bioinformatics Conference, 67-80, 2007
262007
Biclustering with Flexible Plaid Models to Unravel Interactions between Biological Processes
R Henriques, SC Madeira
IEEE/ACM Transactions on Computational Biology and Bioinformatics 12 (4), 2015
252015
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