Xiaowen (Kevin) Liu
Xiaowen (Kevin) Liu
Division of Biomedical Informatics and Genomics, School of Medicine, Tulane University
Verified email at - Homepage
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TopPIC: A software tool for top-down mass spectrometry-based proteoform identification and characterization
Q Kou, L Xun, X Liu
Bioinformatics 32 (22), 3495-3497, 2016
Identification and Quantification of Proteoforms by Mass Spectrometry
LV Schaffer, RJ Millikin, RM Miller, LC Anderson, RT Fellers, Y Ge, ...
Proteomics 19 (10), 1800361, 2019
Computing the maximum similarity bi-clusters of gene expression data
X Liu, L Wang
Bioinformatics 23 (1), 50-56, 2007
Deconvolution and Database Search of Complex Tandem Mass Spectra of Intact Proteins: A Combinatorial Approach
X Liu, Y Inbar, PC Dorrestein, C Wynne, N Edwards, P Souda, ...
Molecular & Cellular Proteomics 9 (12), 2772-2782, 2010
Protein identification using top-down spectra
X Liu, Y Sirotkin, Y Shen, G Anderson, YS Tsai, YS Ting, DR Goodlett, ...
Molecular & Cellular Proteomics 11 (6), 2012
Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions
C Ansong, S Wu, D Meng, X Liu, HM Brewer, BL Deatherage Kaiser, ...
Proceedings of the National Academy of Sciences 110 (25), 10153-10158, 2013
MASH Suite Pro: a comprehensive software tool for top-down proteomics
W Cai, H Guner, ZR Gregorich, AJ Chen, S Ayaz-Guner, Y Peng, ...
Molecular & Cellular Proteomics 15 (2), 703-714, 2016
Top-down proteomics reveals concerted reductions in myofilament and Z-disc protein phosphorylation after acute myocardial infarction
Y Peng, ZR Gregorich, SG Valeja, H Zhang, W Cai, YC Chen, H Guner, ...
Molecular & Cellular Proteomics 13 (10), 2752-2764, 2014
Deep Top-Down Proteomics Using Capillary Zone Electrophoresis-Tandem Mass Spectrometry: Identification of 5700 Proteoforms from the Escherichia coli Proteome
EN McCool, RA Lubeckyj, X Shen, D Chen, Q Kou, X Liu, L Sun
Analytical chemistry 90 (9), 5529-5533, 2018
Single-shot top-down proteomics with capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry for identification of nearly 600 Escherichia coli proteoforms
RA Lubeckyj, EN McCool, X Shen, Q Kou, X Liu, L Sun
Analytical chemistry 89 (22), 12059-12067, 2017
Dereplicating nonribosomal peptides using an informatic search algorithm for natural products (iSNAP) discovery
A Ibrahim, L Yang, C Johnston, X Liu, B Ma, NA Magarvey
Proceedings of the National Academy of Sciences 109 (47), 19196-19201, 2012
Improving protein order-disorder classification using charge-hydropathy plots
F Huang, CJ Oldfield, B Xue, WL Hsu, J Meng, X Liu, L Shen, P Romero, ...
BMC bioinformatics 15 (Suppl 17), S4, 2014
MASH explorer: A universal software environment for top-down proteomics
Z Wu, DS Roberts, JA Melby, K Wenger, M Wetzel, Y Gu, SG Ramanathan, ...
Journal of proteome research 19 (9), 3867-3876, 2020
De novo protein sequencing by combining top-down and bottom-up tandem mass spectra
X Liu, LJM Dekker, S Wu, M VanDuijn, TM Luider, N Tolić, Q Kou, ...
Journal of proteome research 13 (7), 3241–3248, 2014
Native Proteomics in Discovery Mode Using Size-Exclusion Chromatography–Capillary Zone Electrophoresis–Tandem Mass Spectrometry
X Shen, Q Kou, R Guo, Z Yang, D Chen, X Liu, H Hong, L Sun
Analytical chemistry 90 (17), 10095-10099, 2018
Top-down analysis of immunoglobulin G isotypes 1 and 2 with electron transfer dissociation on a high-field Orbitrap mass spectrometer
L Fornelli, D Ayoub, K Aizikov, X Liu, E Damoc, PA Pevzner, A Makarov, ...
Journal of Proteomics 159, 67-76, 2017
Quantitative analysis of human salivary gland‐derived intact proteome using top‐down mass spectrometry
S Wu, JN Brown, N Tolić, D Meng, X Liu, H Zhang, R Zhao, RJ Moore, ...
Proteomics 14 (10), 1211-1222, 2014
Identification of ultramodified proteins using top-down tandem mass spectra
X Liu, S Hengel, S Wu, N Tolić, L Pasa-Tolic, PA Pevzner
Journal of proteome research 12 (12), 5830-5838, 2013
Automated protein (re) sequencing with MS/MS and a homologous database yields almost full coverage and accuracy
X Liu, Y Han, D Yuen, B Ma
Bioinformatics 25 (17), 2174-2180, 2009
Large-scale qualitative and quantitative top-down proteomics using capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry with nanograms of proteome …
RA Lubeckyj, AR Basharat, X Shen, X Liu, L Sun
Journal of The American Society for Mass Spectrometry 30 (8), 1435-1445, 2019
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