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Sirui Liu
Sirui Liu
postdoctoral researcher, Harvard University
Verified email at fas.harvard.edu
Title
Cited by
Cited by
Year
The transcriptome and DNA methylome landscapes of human primordial germ cells
F Guo, L Yan, H Guo, L Li, B Hu, Y Zhao, J Yong, Y Hu, X Wang, Y Wei, ...
Cell 161 (6), 1437-1452, 2015
5792015
Protein sequence design by conformational landscape optimization
C Norn, BIM Wicky, D Juergens, S Liu, D Kim, D Tischer, B Koepnick, ...
Proceedings of the National Academy of Sciences 118 (11), 2021
162*2021
From 1D sequence to 3D chromatin dynamics and cellular functions: a phase separation perspective
S Liu, L Zhang, H Quan, H Tian, L Meng, L Yang, H Feng, YQ Gao
Nucleic acids research 46 (18), 9367-9383, 2018
572018
DNA methylation landscape reflects the spatial organization of chromatin in different cells
L Zhang, WJ Xie, S Liu, L Meng, C Gu, YQ Gao
Biophysical journal 113 (7), 1395-1404, 2017
572017
Advances in chromatin and chromosome research: perspectives from multiple fields
AA Agbleke, A Amitai, JD Buenrostro, A Chakrabarti, L Chu, AS Hansen, ...
Molecular Cell, 2020
472020
Structural modeling of chromatin integrates genome features and reveals chromosome folding principle
WJ Xie, L Meng, S Liu, L Zhang, X Cai, YQ Gao
Scientific reports 7 (1), 1-11, 2017
472017
Rich dynamics underlying solution reactions revealed by sampling and data mining of reactive trajectories
J Zhang, Z Zhang, YI Yang, S Liu, L Yang, YQ Gao
ACS central science 3 (5), 407-414, 2017
202017
Chromatin structure changes during various processes from a DNA sequence view
H Quan, Y Yang, S Liu, H Tian, Y Xue, YQ Gao
Current opinion in structural biology 62, 1-8, 2020
172020
Computational characterization of domain‐segregated 3D chromatin structure and segmented DNA methylation status in carcinogenesis
Y Xue, Y Yang, H Tian, H Quan, S Liu, L Zhang, L Yang, H Zhu, H Wu, ...
Molecular Oncology, 2021
10*2021
Progressive domain segregation in early embryonic development and underlying correlation to genetic and epigenetic changes
H Quan, H Tian, S Liu, Y Xue, Y Zhang, W Xie, YQ Gao
biorxiv, 521401, 2021
10*2021
Toward an understanding of the relation between gene regulation and 3D genome organization
H Tian, Y Yang, S Liu, H Quan, YQ Gao
Quantitative Biology 8 (4), 295-311, 2020
102020
1D Sequence Based 3D Chromatin Phase Separation: Forces, Processes, and Functions
S Liu, H Quan, H Tian, R Zhou, L Yang, Y Gao
ACTA PHYSICO-CHIMICA SINICA 36 (1), 2020
12020
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Articles 1–12