Anne E. Carpenter
Anne E. Carpenter
Institute Scientist and Imaging Platform Director, Broad Institute of Harvard and MIT
Verified email at broadinstitute.org - Homepage
Title
Cited by
Cited by
Year
CellProfiler: image analysis software for identifying and quantifying cell phenotypes
AE Carpenter, TR Jones, MR Lamprecht, C Clarke, IH Kang, O Friman, ...
Genome biology 7 (10), 1-11, 2006
40272006
A lentiviral RNAi library for human and mouse genes applied to an arrayed viral high-content screen
J Moffat, DA Grueneberg, X Yang, SY Kim, AM Kloepfer, G Hinkle, ...
Cell 124 (6), 1283-1298, 2006
16902006
mTOR complex 1 regulates lipin 1 localization to control the SREBP pathway
TR Peterson, SS Sengupta, TE Harris, AE Carmack, SA Kang, E Balderas, ...
Cell 146 (3), 408-420, 2011
9342011
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software
L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ...
Bioinformatics 27 (8), 1179-1180, 2011
8792011
Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
Journal of The Royal Society Interface 15 (141), 20170387, 2018
8272018
CellProfiler™: free, versatile software for automated biological image analysis
MR Lamprecht, DM Sabatini, AE Carpenter
Biotechniques 42 (1), 71-75, 2007
8102007
Long-range directional movement of an interphase chromosome site
CH Chuang, AE Carpenter, B Fuchsova, T Johnson, P de Lanerolle, ...
Current Biology 16 (8), 825-831, 2006
5512006
CellProfiler 3.0: Next-generation image processing for biology
C McQuin, A Goodman, V Chernyshev, L Kamentsky, BA Cimini, ...
PLoS biology 16 (7), e2005970, 2018
5352018
Biological imaging software tools
KW Eliceiri, MR Berthold, IG Goldberg, L Ibáñez, BS Manjunath, ...
Nature methods 9 (7), 697, 2012
5232012
In germ cells of mouse embryonic ovaries, the decision to enter meiosis precedes premeiotic DNA replication
AE Baltus, DB Menke, YC Hu, ML Goodheart, AE Carpenter, DG de Rooij, ...
Nature genetics 38 (12), 1430-1434, 2006
4622006
CellProfiler Analyst: data exploration and analysis software for complex image-based screens
T Jones, I Kang, D Wheeler, R Lindquist, A Papallo, D Sabatini, P Golland, ...
BMC bioinformatics 9 (1), 482, 2008
4572008
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning
TR Jones, AE Carpenter, MR Lamprecht, J Moffat, SJ Silver, JK Grenier, ...
Proceedings of the National Academy of Sciences 106 (6), 1826-1831, 2009
3782009
Systematic genome-wide screens of gene function
AE Carpenter, DM Sabatini
Nature Reviews Genetics 5 (1), 11-22, 2004
3742004
An algorithm-based topographical biomaterials library to instruct cell fate
HV Unadkat, M Hulsman, K Cornelissen, BJ Papenburg, ...
Proceedings of the National Academy of Sciences 108 (40), 16565-16570, 2011
3342011
Visualization of image data from cells to organisms
T Walter, DW Shattuck, R Baldock, ME Bastin, AE Carpenter, S Duce, ...
Nature methods 7 (3), S26-S41, 2010
2782010
Annotated high-throughput microscopy image sets for validation.
V Ljosa, KL Sokolnicki, AE Carpenter
Nature methods 9 (7), 637-637, 2012
2762012
Data-analysis strategies for image-based cell profiling
JC Caicedo, S Cooper, F Heigwer, S Warchal, P Qiu, C Molnar, ...
Nature methods 14 (9), 849-863, 2017
2692017
Cell Painting, a high-content image-based assay for morphological profiling using multiplexed fluorescent dyes
MA Bray, S Singh, H Han, CT Davis, B Borgeson, C Hartland, ...
Nature protocols 11 (9), 1757, 2016
2482016
667 Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, 668 Eliceiri K, Tomancak P, Cardona A
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch
Fiji: an open-source platform for biological-image 669, 676-682, 0
248*
Identification of small molecules for human hepatocyte expansion and iPS differentiation
J Shan, RE Schwartz, NT Ross, DJ Logan, D Thomas, SA Duncan, ...
Nature chemical biology 9 (8), 514, 2013
2472013
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