Clement Jonquet

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Mark MusenProfessor of Biomedical Informatics Research, Stanford UniversityVerified email at stanford.edu
Nigam ShahProfessor of Medicine, and Biomedical Data Science, Stanford UniversityVerified email at stanford.edu
Stefano A. CerriVicePres.R&D DKTS,Milano(I); Em.Prof. Informatics,Un.Montpellier(F); Dist.Fellow FBK,Trento(I)Verified email at didaelkts.it
Natasha NoyGoogle Inc.Verified email at acm.org
Mathieu RocheCIRAD, TETISVerified email at cirad.fr
Maguelonne TeisseireINRAEVerified email at inrae.fr
Juan Antonio Lossio-VenturaResearch Scientist, National Institutes of HealthVerified email at nih.gov
Vincent EmonetData science developer, Institute of Data Science at Maastricht UniversityVerified email at maastrichtuniversity.nl
Trish WhetzelEMBL-EBIVerified email at ebi.ac.uk
Pierre LarmandeIRD (Institute of Research for Development) - DIADE UnitVerified email at ird.fr
Anne TouletCIRAD (French Agricultural Research Centre for International Development)Verified email at cirad.fr
Margaret-Anne StoreyProfessor of Computer Science, University of VictoriaVerified email at uvic.ca
Elizabeth ArnaudBioversity InternationalVerified email at cgiar.org
Adrien CouletInria Paris & Loria, NancyVerified email at inria.fr
Christopher G. ChuteBloomberg Distinguished Professor of Health Informatics, Johns HopkinsVerified email at jhu.edu
Pascal DugenieCINESVerified email at dugenie.fr
Andon TchechmedjievAssociate Professor at IMT Mines Alès / EuroMov DHMVerified email at mines-ales.fr
John GraybealTechnical Program Manager, Stanford UniversityVerified email at stanford.edu
Amina AnnaneInstitut de recherche en informatique de Toulouse (IRIT)Verified email at irit.fr
Valeria PesceData Scientist & Partnerships Facilitator at the Food and Agriculture Organization of the UnitedVerified email at fao.org

Clement Jonquet

Senior Researcher – INRAE (MISTEA) & Associate Researcher – Univ. of Montpellier (LIRMM)

Verified email at lirmm.fr - Homepage

Ontologies Semantic Web Semantic annotation ontology repository knowledge graphs


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BioPortal: ontologies and integrated data resources at the click of a mouse NF Noy, NH Shah, PL Whetzel, B Dai, M Dorf, N Griffith, C Jonquet, ... Nucleic acids research 37 (suppl_2), W170-W173, 2009	995	2009
The open biomedical annotator C Jonquet, NH Shah, MA Musen Summit on translational bioinformatics 2009, 56, 2009	323	2009
Comparison of concept recognizers for building the Open Biomedical Annotator NH Shah, N Bhatia, C Jonquet, D Rubin, AP Chiang, MA Musen BMC bioinformatics 10 (9), 1-9, 2009	173	2009
Ontology-driven indexing of public datasets for translational bioinformatics NH Shah, C Jonquet, AP Chiang, AJ Butte, R Chen, MA Musen BMC bioinformatics 10 (2), 1-10, 2009	140	2009
AgroPortal: A vocabulary and ontology repository for agronomy C Jonquet, A Toulet, E Arnaud, S Aubin, ED Yeumo, V Emonet, ... Computers and Electronics in Agriculture 144, 126-143, 2018	126	2018
NCBO Resource Index: Ontology-based search and mining of biomedical resources C Jonquet, P LePendu, S Falconer, A Coulet, NF Noy, MA Musen, ... Journal of Web Semantics 9 (3), 316-324, 2011	126	2011
Building a biomedical ontology recommender web service C Jonquet, MA Musen, NH Shah Journal of biomedical semantics 1 (1), 1-18, 2010	103	2010
NCBO annotator: semantic annotation of biomedical data C Jonquet, N Shah, C Youn, C Callendar, MA Storey, M Musen International Semantic Web Conference, Poster and Demo session 110, 2009	103	2009
Biomedical term extraction: overview and a new methodology JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire Information Retrieval Journal 19 (1), 59-99, 2016	85	2016
What four million mappings can tell you about two hundred ontologies A Ghazvinian, NF Noy, C Jonquet, N Shah, MA Musen International Semantic Web Conference, 229-242, 2009	73	2009
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation M Martínez-Romero, C Jonquet, MJ O’connor, J Graybeal, A Pazos, ... Journal of biomedical semantics 8 (1), 1-22, 2017	62	2017
A system for ontology-based annotation of biomedical data C Jonquet, MA Musen, N Shah International Workshop on Data Integration in The Life Sciences, 144-152, 2008	57	2008
BioPortal: ontologies and data resources with the click of a mouse M Musen, N Shah, N Noy, B Dai, M Dorf, N Griffith, JD Buntrock, ... AMIA Annu Symp Proc 6, 1223-1224, 2008	52	2008
Yet another ranking function for automatic multiword term extraction JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire International conference on natural language processing, 52-64, 2014	49	2014
Combining c-value and keyword extraction methods for biomedical terms extraction JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire LBM: Languages in Biology and Medicine, 2013	43	2013
BioPortal: ontologies and integrated data resources at the click of a mouse P Whetzel, N Shah, N Noy, B Dai, M Dorf, N Griffith, C Jonquet, C Youn, ... Nature Precedings, 1-1, 2009	40	2009
BIOTEX: A system for biomedical terminology extraction, ranking, and validation JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire ISWC: International Semantic Web Conference, 157-160, 2014	39	2014
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture L Harper, J Campbell, EKS Cannon, S Jung, M Poelchau, R Walls, ... Database 2018, 2018	36	2018
The Grid Shared Desktop: a bootstrapping environment for collaboration P Dugénie, P Lemoisson, C Jonquet, M Crubézy, C Lorenço Advanced Technology for Learning 3 (4), 241-249, 2006	30	2006
Biomedical terminology extraction: A new combination of statistical and web mining approaches JA Lossio-Ventura, C Jonquet, M Roche, M Teisseire JADT: Journées d'Analyse statistique des Données Textuelles, 421-432, 2014	28	2014

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