| Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature Methods 9 (7), 676-682, 2012 | 26452 | 2012 |
| Globally optimal stitching of tiled 3D microscopic image acquisitions S Preibisch, S Saalfeld, P Tomancak Bioinformatics 25 (11), 1463-1465, 2009 | 1465 | 2009 |
| TrakEM2 software for neural circuit reconstruction A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ... PLoS One 7 (6), e38011, 2012 | 601 | 2012 |
| A complete electron microscopy volume of the brain of adult Drosophila melanogaster Z Zheng, JS Lauritzen, E Perlman, CG Robinson, M Nichols, D Milkie, ... Cell 174 (3), 730-743. e22, 2018 | 350 | 2018 |
| An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy A Cardona, S Saalfeld, S Preibisch, B Schmid, A Cheng, J Pulokas, ... PLoS Biology 8 (10), e1000502, 2010 | 332 | 2010 |
| Software for bead-based registration of selective plane illumination microscopy data S Preibisch, S Saalfeld, J Schindelin, P Tomancak Nature methods 7 (6), 418-419, 2010 | 325 | 2010 |
| CATMAID: collaborative annotation toolkit for massive amounts of image data S Saalfeld, A Cardona, V Hartenstein, P Tomančák Bioinformatics 25 (15), 1984-1986, 2009 | 230 | 2009 |
| Elastic volume reconstruction from series of ultra-thin microscopy sections S Saalfeld, R Fetter, A Cardona, P Tomancak Nature Methods 9 (7), 717-720, 2012 | 212 | 2012 |
| Quantitative neuroanatomy for connectomics in Drosophila CM Schneider-Mizell, S Gerhard, M Longair, T Kazimiers, F Li, MF Zwart, ... Elife 5, e12059, 2016 | 201 | 2016 |
| Whole-brain serial-section electron microscopy in larval zebrafish DGC Hildebrand, M Cicconet, RM Torres, W Choi, TM Quan, J Moon, ... Nature 545 (7654), 345-349, 2017 | 173 | 2017 |
| BigDataViewer: visualization and processing for large image data sets T Pietzsch, S Saalfeld, S Preibisch, P Tomancak Nature Methods 12 (6), 481-483, 2015 | 145 | 2015 |
| Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution R Gao, SM Asano, S Upadhyayula, I Pisarev, DE Milkie, TL Liu, V Singh, ... Science 363 (6424), eaau8302, 2019 | 138 | 2019 |
| As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets S Saalfeld, A Cardona, V Hartenstein, P Tomančák Bioinformatics 26 (12), i57-i63, 2010 | 124 | 2010 |
| A Connectome and Analysis of the Adult Drosophila Central Brain LK Scheffer, CS Xu, M Januszewski, Z Lu, S Takemura, KJ Hayworth, ... bioRxiv, 2020 | 104* | 2020 |
| Systematic imaging reveals features and changing localization of mRNAs in Drosophila development H Jambor, V Surendranath, AT Kalinka, P Mejstrik, S Saalfeld, ... eLife 4, e05003, 2015 | 93 | 2015 |
| Large scale image segmentation with structured loss based deep learning for connectome reconstruction J Funke, F Tschopp, W Grisaitis, A Sheridan, C Singh, S Saalfeld, ... IEEE transactions on pattern analysis and machine intelligence 41 (7), 1669-1680, 2018 | 91* | 2018 |
| ImgLib2—generic image processing in Java T Pietzsch, S Preibisch, P Tomančák, S Saalfeld Bioinformatics 28 (22), 3009–3011, 2012 | 91 | 2012 |
| Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts A Cardona, S Saalfeld, I Arganda, W Pereanu, J Schindelin, V Hartenstein The Journal of Neuroscience 30 (22), 7538-7553, 2010 | 60 | 2010 |
| To the cloud! A grassroots proposal to accelerate brain science discovery JT Vogelstein, B Mensh, M Häusser, N Spruston, AC Evans, K Kording, ... Neuron 92 (3), 622-627, 2016 | 35 | 2016 |
| Robust registration of calcium images by learned contrast synthesis JA Bogovic, P Hanslovsky, A Wong, S Saalfeld 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), 1123-1126, 2016 | 33 | 2016 |
Pavel TomancakResearch Group Leader at the Max Planck Institute of Molecular Cell Biology and Genetics in DresdenVerified email at mpi-cbg.de
