Stephan Saalfeld
Stephan Saalfeld
HHMI Janelia Research Campus
Verified email at - Homepage
Cited by
Cited by
Fiji: an open-source platform for biological-image analysis
J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ...
Nature Methods 9 (7), 676-682, 2012
Globally optimal stitching of tiled 3D microscopic image acquisitions
S Preibisch, S Saalfeld, P Tomancak
Bioinformatics 25 (11), 1463-1465, 2009
TrakEM2 software for neural circuit reconstruction
A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ...
PLoS One 7 (6), e38011, 2012
A complete electron microscopy volume of the brain of adult Drosophila melanogaster
Z Zheng, JS Lauritzen, E Perlman, CG Robinson, M Nichols, D Milkie, ...
Cell 174 (3), 730-743. e22, 2018
An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy
A Cardona, S Saalfeld, S Preibisch, B Schmid, A Cheng, J Pulokas, ...
PLoS Biology 8 (10), e1000502, 2010
Software for bead-based registration of selective plane illumination microscopy data
S Preibisch, S Saalfeld, J Schindelin, P Tomancak
Nature methods 7 (6), 418-419, 2010
CATMAID: collaborative annotation toolkit for massive amounts of image data
S Saalfeld, A Cardona, V Hartenstein, P Tomančák
Bioinformatics 25 (15), 1984-1986, 2009
Elastic volume reconstruction from series of ultra-thin microscopy sections
S Saalfeld, R Fetter, A Cardona, P Tomancak
Nature Methods 9 (7), 717-720, 2012
Quantitative neuroanatomy for connectomics in Drosophila
CM Schneider-Mizell, S Gerhard, M Longair, T Kazimiers, F Li, MF Zwart, ...
Elife 5, e12059, 2016
Whole-brain serial-section electron microscopy in larval zebrafish
DGC Hildebrand, M Cicconet, RM Torres, W Choi, TM Quan, J Moon, ...
Nature 545 (7654), 345-349, 2017
Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution
R Gao, SM Asano, S Upadhyayula, I Pisarev, DE Milkie, TL Liu, V Singh, ...
Science 363 (6424), eaau8302, 2019
BigDataViewer: visualization and processing for large image data sets
T Pietzsch, S Saalfeld, S Preibisch, P Tomancak
Nature Methods 12 (6), 481-483, 2015
A Connectome and Analysis of the Adult Drosophila Central Brain
LK Scheffer, CS Xu, M Januszewski, Z Lu, S Takemura, KJ Hayworth, ...
bioRxiv, 2020
As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets
S Saalfeld, A Cardona, V Hartenstein, P Tomančák
Bioinformatics 26 (12), i57-i63, 2010
Systematic imaging reveals features and changing localization of mRNAs in Drosophila development
H Jambor, V Surendranath, AT Kalinka, P Mejstrik, S Saalfeld, ...
eLife 4, e05003, 2015
Large scale image segmentation with structured loss based deep learning for connectome reconstruction
J Funke, F Tschopp, W Grisaitis, A Sheridan, C Singh, S Saalfeld, ...
IEEE transactions on pattern analysis and machine intelligence 41 (7), 1669-1680, 2018
ImgLib2—generic image processing in Java
T Pietzsch, S Preibisch, P Tomančák, S Saalfeld
Bioinformatics 28 (22), 3009–3011, 2012
Identifying neuronal lineages of Drosophila by sequence analysis of axon tracts
A Cardona, S Saalfeld, I Arganda, W Pereanu, J Schindelin, V Hartenstein
The Journal of Neuroscience 30 (22), 7538-7553, 2010
Robust registration of calcium images by learned contrast synthesis
JA Bogovic, P Hanslovsky, A Wong, S Saalfeld
2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), 1123-1126, 2016
To the cloud! A grassroots proposal to accelerate brain science discovery
JT Vogelstein, B Mensh, M Häusser, N Spruston, AC Evans, K Kording, ...
Neuron 92 (3), 622-627, 2016
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