A high speed detection platform based on surface-enhanced Raman scattering for monitoring antibiotic-induced chemical changes in bacteria cell wall TT Liu, YH Lin, CS Hung, TJ Liu, Y Chen, YC Huang, TH Tsai, HH Wang, ... PloS one 4 (5), e5470, 2009 | 216 | 2009 |
Utilization of metabolomics to identify serum biomarkers for hepatocellular carcinoma in patients with liver cirrhosis HW Ressom, JF Xiao, L Tuli, RS Varghese, B Zhou, TH Tsai, ... Analytica chimica acta 743, 90-100, 2012 | 166 | 2012 |
LC–MS Based Serum Metabolomics for Identification of Hepatocellular Carcinoma Biomarkers in Egyptian Cohort JF Xiao, RS Varghese, B Zhou, MR Nezami Ranjbar, Y Zhao, TH Tsai, ... Journal of proteome research 11 (12), 5914-5923, 2012 | 147 | 2012 |
SETER/PR: a robust 18-gene predictor for sensitivity to endocrine therapy for metastatic breast cancer BV Sinn, C Fu, R Lau, J Litton, TH Tsai, R Murthy, A Tam, E Andreopoulou, ... NPJ breast cancer 5 (1), 16, 2019 | 107 | 2019 |
LC‐MS/MS‐based serum proteomics for identification of candidate biomarkers for hepatocellular carcinoma TH Tsai, E Song, R Zhu, C Di Poto, M Wang, Y Luo, RS Varghese, ... Proteomics 15 (13), 2369-2381, 2015 | 90 | 2015 |
MassIVE. quant: a community resource of quantitative mass spectrometry–based proteomics datasets M Choi, J Carver, C Chiva, M Tzouros, T Huang, TH Tsai, B Pullman, ... Nature Methods 17 (10), 981-984, 2020 | 68 | 2020 |
LC–MS profiling of N-glycans derived from human serum samples for biomarker discovery in hepatocellular carcinoma TH Tsai, M Wang, C Di Poto, Y Hu, S Zhou, Y Zhao, RS Varghese, Y Luo, ... Journal of proteome research 13 (11), 4859-4868, 2014 | 59 | 2014 |
Preprocessing and Analysis of LC-MS-Based Proteomic Data TH Tsai, M Wang, HW Ressom Statistical Analysis in Proteomics, 63-76, 2016 | 39 | 2016 |
Membrane targeting and coupling of NHE1-integrináIIbâ3-NCX1 by lipid rafts following integrin-ligand interactions trigger Ca2+ oscillations YH Yi, PY Ho, TW Chen, WJ Lin, V Gukassyan, TH Tsai, DW Wang, ... Journal of Biological Chemistry 284 (6), 3855-3864, 2009 | 36 | 2009 |
Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards TH Tsai, MG Tadesse, C Di Poto, LK Pannell, Y Mechref, Y Wang, ... Bioinformatics 29 (21), 2774-2780, 2013 | 32 | 2013 |
Proteome-wide structural changes measured with limited proteolysis-mass spectrometry: an advanced protocol for high-throughput applications L Malinovska, V Cappelletti, D Kohler, I Piazza, TH Tsai, M Pepelnjak, ... Nature Protocols 18 (3), 659-682, 2023 | 28 | 2023 |
Selection of features with consistent profiles improves relative protein quantification in mass spectrometry experiments TH Tsai, M Choi, B Banfai, Y Liu, BX MacLean, T Dunkley, O Vitek Molecular & Cellular Proteomics 19 (6), 944-959, 2020 | 28 | 2020 |
Using a spike-in experiment to evaluate analysis of LC-MS data L Tuli, TH Tsai, RS Varghese, JF Xiao, A Cheema, HW Ressom Proteome science 10 (1), 1-11, 2012 | 24 | 2012 |
MSstats Version 4.0: Statistical Analyses of Quantitative Mass Spectrometry-Based Proteomic Experiments with Chromatography-Based Quantification at Scale D Kohler, M Staniak, TH Tsai, T Huang, N Shulman, OM Bernhardt, ... Journal of Proteome Research, 2023 | 17 | 2023 |
Profile-Based LC-MS Data Alignment-A Bayesian Approach TH Tsai, MG Tadesse, Y Wang, HW Ressom IEEE/ACM Transactions on Computational Biology and Bioinformatics 10 (2 …, 2013 | 16 | 2013 |
Multiplexed proteomics of autophagy-deficient murine macrophages reveals enhanced antimicrobial immunity via the oxidative stress response T Maculins, E Verschueren, T Hinkle, M Choi, P Chang, C Chalouni, ... eLife 10, e62320, 2021 | 11 | 2021 |
MSstatsPTM: Statistical Relative Quantification of Posttranslational Modifications in Bottom-Up Mass Spectrometry-Based Proteomics D Kohler, TH Tsai, E Verschueren, T Huang, T Hinkle, L Phu, M Choi, ... Molecular & Cellular Proteomics 22 (1), 2023 | 8 | 2023 |
Hybrid svm/cart classification of pathogenic species of bacterial meningitis with surface-enhanced raman scattering CY Huang, TH Tsai, BC Wen, CW Chung, YJ Li, YC Chuang, WJ Lin, ... 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2010 | 6 | 2010 |
Probabilistic mixture regression models for alignment of LC-MS data GK Befekadu, MG Tadesse, TH Tsai, HW Ressom IEEE/ACM transactions on computational biology and bioinformatics 8 (5 …, 2010 | 6 | 2010 |
Measuring acetyl-CoA and acetylated histone turnover in vivo: Effect of a high fat diet A Arias-Alvarado, M Aghayev, S Ilchenko, N Rachdaoui, J Lepp, TH Tsai, ... Analytical Biochemistry 615, 114067, 2021 | 5 | 2021 |