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Macha Nikolski
Macha Nikolski
CNRS IBGC / CBiB - University of Bordeaux
Verified email at u-bordeaux.fr
Title
Cited by
Cited by
Year
Genome evolution in yeasts
B Dujon, D Sherman, G Fischer, P Durrens, S Casaregola, I Lafontaine, ...
Nature 430 (6995), 35-44, 2004
19532004
The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data
H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, ...
Nature biotechnology 22 (2), 177-183, 2004
7552004
Comparative genomics of protoploid Saccharomycetaceae
JL Souciet, B Dujon, C Gaillardin, M Johnston, PV Baret, P Cliften, ...
Genome research 19 (10), 1696-1709, 2009
2432009
Minimum information about a simulation experiment (MIASE)
D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ...
PLoS computational biology 7 (4), e1001122, 2011
1632011
ProViz: protein interaction visualization and exploration
F Iragne, M Nikolski, B Mathieu, D Auber, D Sherman
Bioinformatics 21 (2), 272-274, 2005
1572005
COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access
RM Salek, S Neumann, D Schober, J Hummel, K Billiau, J Kopka, ...
Metabolomics 11, 1587-1597, 2015
1442015
Genolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes
DJ Sherman, T Martin, M Nikolski, C Cayla, JL Souciet, P Durrens
Nucleic acids research 37 (suppl_1), D550-D554, 2009
1412009
Data standards can boost metabolomics research, and if there is a will, there is a way
P Rocca-Serra, RM Salek, M Arita, E Correa, S Dayalan, ...
Metabolomics 12, 1-13, 2016
1232016
Genolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts
D Sherman, Génolevures Consortium, P Durrens, ...
Nucleic acids research 32 (suppl_1), D315-D318, 2004
1072004
Argininosuccinate synthase 1 (ASS1): a marker of unclassified hepatocellular adenoma and high bleeding risk
E Henriet, A Abou Hammoud, JW Dupuy, B Dartigues, Z Ezzoukry, ...
Hepatology 66 (6), 2016-2028, 2017
782017
Intestinal inflammation in children with cystic fibrosis is associated with Crohn˘s-like microbiota disturbances
R Enaud, KB Hooks, A Barre, T Barnetche, C Hubert, M Massot, T Bazin, ...
Journal of Clinical Medicine 8 (5), 645, 2019
752019
Microbiota composition may predict anti-TNF alpha response in spondyloarthritis patients: an exploratory study
T Bazin, KB Hooks, T Barnetche, ME Truchetet, R Enaud, C Richez, ...
Scientific reports 8 (1), 5446, 2018
752018
MeRy-B: a web knowledgebase for the storage, visualization, analysis and annotation of plant NMR metabolomic profiles
H Ferry-Dumazet, L Gil, C Deborde, A Moing, S Bernillon, D Rolin, ...
BMC plant biology 11, 1-12, 2011
702011
Machine learning for metagenomics: methods and tools
H Soueidan, M Nikolski
arXiv preprint arXiv:1510.06621, 2015
672015
A community effort to create standards for evaluating tumor subclonal reconstruction
A Salcedo, et al.
Nature Biotechnology 38 (1), 97-107, 2020
642020
Genolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts
D Sherman, P Durrens, F Iragne, E Beyne, M Nikolski, JL Souciet
Nucleic Acids Research 34 (suppl_1), D432-D435, 2006
612006
Genome‐wide association links candidate genes to resistance to Plum Pox Virus in apricot (Prunus armeniaca)
S Mariette, F Wong Jun Tai, G Roch, A Barre, A Chague, S Decroocq, ...
New Phytologist 209 (2), 773-784, 2016
582016
Population genomics of apricots unravels domestication history and adaptive events
A Groppi, S Liu, A Cornille, S Decroocq, QT Bui, D Tricon, C Cruaud, ...
Nature Communications 12 (1), 3956, 2021
552021
Baseline co-medications may alter the anti-tumoural effect of checkpoint inhibitors as well as the risk of immune-related adverse events
M Kostine, E Mauric, A Tison, T Barnetche, A Barre, M Nikolski, L Rouxel, ...
European Journal of Cancer 157, 474-484, 2021
502021
Towards an open grapevine information system
AF Adam-Blondon, M Alaux, C Pommier, D Cantu, ZM Cheng, GR Cramer, ...
Horticulture research 3, 2016
482016
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