Nikolas Papanikolaou
Title
Cited by
Cited by
Year
Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies
A Oulas, C Pavloudi, P Polymenakou, GA Pavlopoulos, N Papanikolaou, ...
Bioinformatics and biology insights 9, BBI. S12462, 2015
3082015
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
GA Pavlopoulos, D Malliarakis, N Papanikolaou, T Theodosiou, ...
Gigascience 4 (1), s13742-015-0077-2, 2015
792015
Protein–protein interaction predictions using text mining methods
N Papanikolaou, GA Pavlopoulos, T Theodosiou, I Iliopoulos
Methods 74, 47-53, 2015
772015
ProteoSign: an end-user online differential proteomics statistical analysis platform
G Efstathiou, AN Antonakis, GA Pavlopoulos, T Theodosiou, P Divanach, ...
Nucleic acids research 45 (W1), W300-W306, 2017
272017
Gene socialization: gene order, GC content and gene silencing in Salmonella
N Papanikolaou, K Trachana, T Theodosiou, VJ Promponas, I Iliopoulos
BMC genomics 10 (1), 1-10, 2009
222009
NAP: the network analysis profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
T Theodosiou, G Efstathiou, N Papanikolaou, NC Kyrpides, PG Bagos, ...
BMC research notes 10 (1), 1-9, 2017
202017
BioTextQuest + : a knowledge integration platform for literature mining and concept discovery
N Papanikolaou, GA Pavlopoulos, E Pafilis, T Theodosiou, R Schneider, ...
Bioinformatics 30 (22), 3249-3256, 2014
192014
Genome urbanization: clusters of topologically co-regulated genes delineate functional compartments in the genome of Saccharomyces cerevisiae
M Tsochatzidou, M Malliarou, N Papanikolaou, J Roca, C Nikolaou
Nucleic acids research 45 (10), 5818-5828, 2017
182017
DrugQuest-a text mining workflow for drug association discovery
N Papanikolaou, GA Pavlopoulos, T Theodosiou, IS Vizirianakis, ...
BMC bioinformatics 17 (5), 333-341, 2016
182016
BioTextQuest: a web-based biomedical text mining suite for concept discovery
N Papanikolaou, E Pafilis, S Nikolaou, CA Ouzounis, I Iliopoulos, ...
Bioinformatics 27 (23), 3327-3328, 2011
162011
The chlamydiales pangenome revisited: structural stability and functional coherence
FE Psomopoulos, VI Siarkou, N Papanikolaou, I Iliopoulos, AS Tsaftaris, ...
Genes 3 (2), 291-319, 2012
122012
Evidence for APOBEC3B mRNA and protein expression in oral squamous cell carcinomas
G Fanourakis, K Tosios, N Papanikolaou, I Chatzistamou, M Xydous, ...
Experimental and molecular pathology 101 (3), 314-319, 2016
102016
The gene toolkit implicated in functional sex in Sparidae hermaphrodites: Inferences from comparative transcriptomics
A Tsakogiannis, T Manousaki, J Lagnel, N Papanikolaou, ...
Frontiers in genetics 9, 749, 2019
62019
UniProt-Related Documents (UniReD): assisting wet lab biologists in their quest on finding novel counterparts in a protein network
T Theodosiou, N Papanikolaou, M Savvaki, G Bonetto, S Maxouri, ...
NAR Genomics and Bioinformatics 2 (1), lqaa005, 2020
32020
OnTheFly 2.0: a tool for automatic annotation of files and biological information extraction
E Pafilis, GA Pavlopoulos, VP Satagopam, N Papanikolaou, H Horn, ...
13th IEEE International Conference on BioInformatics and BioEngineering, 1-4, 2013
22013
Monitoring the prolonged TNF stimulation in space and time with topological-functional networks
SM Papoudas, N Papanikolaou, C Nikolaou
Computational and structural biotechnology journal 18, 220-229, 2020
2020
Monitoring the prolonged Tnf stimulation in space and time with topological-functional networks
S Mavropoulos Papoudas, N Papanikolaou, C Nikolaou
2020
Erratum: BioTextQuest+: a knowledge integration platform for literature mining and concept discovery (Bioinformatics (2014) 30: 22 (3249-3256
N Papanikolaou, GA Pavlopoulos, E Pafilis, TG Theodosiou, R Schneider, ...
2015
Bioinformatics Advance Access published February 11, 2015
N Papanikolaou, GA Pavlopoulos, E Pafilis, T Theodosiou, R Schneider, ...
Bioinformatics 30 (22), 3249-3256, 2014
2014
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Articles 1–19