Feng Yue
Feng Yue
Director of Cancer Genomics, Professor of Biochemistry, Northwestern University
Verified email at
Cited by
Cited by
Topological domains in mammalian genomes identified by analysis of chromatin interactions
JR Dixon, S Selvaraj, F Yue, A Kim, Y Li, Y Shen, M Hu, JS Liu, B Ren
Nature 485 (7398), 376-380, 2012
A comparative encyclopedia of DNA elements in the mouse genome
F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ...
Nature 515 (7527), 355-364, 2014
A map of the cis-regulatory sequences in the mouse genome
Y Shen, F Yue, DF McCleary, Z Ye, L Edsall, S Kuan, U Wagner, J Dixon, ...
Nature 488 (7409), 116-120, 2012
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
Topologically associating domains are stable units of replication-timing regulation
BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ...
Nature 515 (7527), 402-405, 2014
Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome
W Xie, CL Barr, A Kim, F Yue, AY Lee, J Eubanks, EL Dempster, B Ren
Cell 148 (4), 816-831, 2012
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
Y Wang, F Song, B Zhang, L Zhang, J Xu, D Kuang, D Li, MNK Choudhary, ...
Genome biology 19 (1), 151, 2018
Epigenetic memory at embryonic enhancers identified in DNA methylation maps from adult mouse tissues
GC Hon, N Rajagopal, Y Shen, DF McCleary, F Yue, MD Dang, B Ren
Nature genetics 45 (10), 1198-1206, 2013
HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
T Yang, F Zhang, GG Yardımcı, F Song, RC Hardison, WS Noble, F Yue, ...
Genome research 27 (11), 1939-1949, 2017
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome biology 13 (8), 418, 2012
Integrative detection and analysis of structural variation in cancer genomes
JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ...
Nature genetics 50 (10), 1388, 2018
Inherited GATA3 variants are associated with Ph-like childhood acute lymphoblastic leukemia and risk of relapse
V Perez-Andreu, KG Roberts, RC Harvey, W Yang, C Cheng, D Pei, H Xu, ...
Nature genetics 45 (12), 1494-1498, 2013
Epigenetic Priming of Enhancers Predicts Developmental Competence of hESC-Derived Endodermal Lineage Intermediates
A Wang, F Yue, Y Li, R Xie, T Harper, NA Patel, K Muth, J Palmer, Y Qiu, ...
Cell stem cell 16 (4), 386-399, 2015
Integrative analysis of haplotype-resolved epigenomes across human tissues
D Leung, I Jung, N Rajagopal, A Schmitt, S Selvaraj, AY Lee, CA Yen, ...
Nature 518 (7539), 350-354, 2015
Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus
Y Zhang, L An, J Xu, B Zhang, WJ Zheng, M Hu, J Tang, F Yue
Nature communications 9 (1), 750, 2018
Measuring the reproducibility and quality of Hi-C data
GG Yardımcı, H Ozadam, MEG Sauria, O Ursu, KK Yan, T Yang, ...
Genome biology 20 (1), 57, 2019
An encyclopedia of mouse DNA elements (Mouse ENCODE)
EC Mouse, JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, ...
Genome Biol 13 (8), 418, 2012
FOXA1, GATA3 and PPARɣ cooperate to drive luminal subtype in bladder cancer: a molecular analysis of established human cell lines
JI Warrick, V Walter, H Yamashita, E Chung, L Shuman, VO Amponsa, ...
Scientific reports 6 (1), 1-15, 2016
A genome-wide association study of susceptibility to acute lymphoblastic leukemia in adolescents and young adults.
V Perez-Andreu, KG Roberts, H Xu, C Smith, H Zhang, W Yang, ...
Blood, 2014
An integrative ENCODE resource for cancer genomics
J Zhang, D Lee, V Dhiman, P Jiang, J Xu, P McGillivray, H Yang, J Liu, ...
Nature communications 11 (1), 1-11, 2020
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