James Malone
James Malone
CTO, SciBite
Verified email at scibite.com - Homepage
Title
Cited by
Cited by
Year
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression
H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ...
Nucleic acids research 37 (suppl_1), D868-D872, 2009
4842009
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data
WA Kibbe, C Arze, V Felix, E Mitraka, E Bolton, G Fu, CJ Mungall, ...
Nucleic acids research 43 (D1), D1071-D1078, 2015
4552015
ArrayExpress update—trends in database growth and links to data analysis tools
G Rustici, N Kolesnikov, M Brandizi, T Burdett, M Dylag, I Emam, A Farne, ...
Nucleic acids research 41 (D1), D987-D990, 2012
3882012
ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments
H Parkinson, U Sarkans, N Kolesnikov, N Abeygunawardena, T Burdett, ...
Nucleic acids research 39 (suppl_1), D1002-D1004, 2010
3532010
Modeling sample variables with an Experimental Factor Ontology
J Malone, E Holloway, T Adamusiak, M Kapushesky, J Zheng, ...
Bioinformatics 26 (8), 1112-1118, 2010
3482010
Expression Atlas update—a database of gene and transcript expression from microarray-and sequencing-based functional genomics experiments
R Petryszak, T Burdett, B Fiorelli, NA Fonseca, M Gonzalez-Porta, ...
Nucleic acids research 42 (D1), D926-D932, 2014
2992014
Modeling biomedical experimental processes with OBI
RR Brinkman, M Courtot, D Derom, JM Fostel, Y He, P Lord, J Malone, ...
Journal of biomedical semantics 1 (S1), S7, 2010
2942010
The EBI RDF platform: linked open data for the life sciences
S Jupp, J Malone, J Bolleman, M Brandizi, M Davies, L Garcia, A Gaulton, ...
Bioinformatics 30 (9), 1338-1339, 2014
2262014
Gene expression atlas at the European bioinformatics institute
M Kapushesky, I Emam, E Holloway, P Kurnosov, A Zorin, J Malone, ...
Nucleic acids research 38 (suppl_1), D690-D698, 2010
2252010
Open Targets: a platform for therapeutic target identification and validation
G Koscielny, P An, D Carvalho-Silva, JA Cham, L Fumis, R Gasparyan, ...
Nucleic acids research 45 (D1), D985-D994, 2017
1892017
Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments
M Kapushesky, T Adamusiak, T Burdett, A Culhane, A Farne, A Filippov, ...
Nucleic acids research 40 (D1), D1077-D1081, 2012
1712012
The ontology for biomedical investigations
A Bandrowski, R Brinkman, M Brochhausen, MH Brush, B Bug, ...
PloS one 11 (4), e0154556, 2016
1592016
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
J Ison, M Kalaš, I Jonassen, D Bolser, M Uludag, H McWilliam, J Malone, ...
Bioinformatics 29 (10), 1325-1332, 2013
1442013
MIREOT: The minimum information to reference an external ontology term
M Courtot, F Gibson, AL Lister, J Malone, D Schober, RR Brinkman, ...
Applied Ontology 6 (1), 23-33, 2011
1182011
Data mining using rule extraction from Kohonen self-organising maps
J Malone, K McGarry, S Wermter, C Bowerman
Neural Computing & Applications 15 (1), 9-17, 2006
832006
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ...
PLoS biology 15 (6), e2001414, 2017
652017
CLO: the cell line ontology
S Sarntivijai, Y Lin, Z Xiang, TF Meehan, AD Diehl, UD Vempati, ...
Journal of biomedical semantics 5 (1), 1-10, 2014
612014
Properties of the (DSS)n triplet repeat domain of rat dentin phosphophoryn
A Veis, K Wei, C Sfeir, A George, J Malone
European journal of oral sciences 106 (S1), 234-238, 1998
581998
MIREOT: the minimum information to reference an external ontology term
M Courtot, F Gibson, AL Lister, J Malone, D Schober, RR Brinkman, ...
ICBO, 87, 2009
562009
The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation
J Malone, A Brown, AL Lister, J Ison, D Hull, H Parkinson, R Stevens
Journal of biomedical semantics 5 (1), 25, 2014
532014
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