|Integrating structured and unstructured EHR data using an FHIR-based type system: a case study with medication data|
N Hong, A Wen, F Shen, S Sohn, S Liu, H Liu, G Jiang
AMIA Summits on Translational Science Proceedings 2018, 74, 2018
|HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology|
F Shen, S Peng, Y Fan, A Wen, S Liu, Y Wang, L Wang, H Liu
Journal of biomedical informatics 96, 103246, 2019
|Utilization of electronic medical records and biomedical literature to support the diagnosis of rare diseases using data fusion and collaborative filtering approaches|
F Shen, S Liu, Y Wang, A Wen, L Wang, H Liu
JMIR medical informatics 6 (4), e11301, 2018
|Developing a FHIR-based EHR phenotyping framework: A case study for identification of patients with obesity and multiple comorbidities from discharge summaries|
N Hong, A Wen, DJ Stone, S Tsuji, PR Kingsbury, LV Rasmussen, ...
Journal of Biomedical Informatics 99, 103310, 2019
|Constructing node embeddings for human phenotype ontology to assist phenotypic similarity measurement|
F Shen, S Liu, Y Wang, L Wang, A Wen, AH Limper, H Liu
2018 IEEE International Conference on Healthcare Informatics Workshop (ICHI …, 2018
|Standardizing heterogeneous annotation corpora using HL7 FHIR for facilitating their reuse and integration in clinical NLP|
N Hong, A Wen, MR Mojarad, S Sohn, H Liu, G Jiang
AMIA Annual Symposium Proceedings 2018, 574, 2018
|Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation|
A Wen, S Fu, S Moon, M El Wazir, A Rosenbaum, VC Kaggal, S Liu, ...
NPJ digital medicine 2 (1), 1-7, 2019
|Test collections for electronic health record-based clinical information retrieval|
Y Wang, A Wen, S Liu, W Hersh, S Bedrick, H Liu
JAMIA open 2 (3), 360-368, 2019
|Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data|
N Hong, A Wen, F Shen, S Sohn, C Wang, H Liu, G Jiang
JAMIA open 2 (4), 570-579, 2019
|Aligned-ayer Text Search in Clinical Notes|
S Wua, A Wena, Y Wangb, S Liub, H Liub
|Developing an FHIR-Based Computational Pipeline for Automatic Population of Case Report Forms for Colorectal Cancer Clinical Trials Using Electronic Health Records|
N Zong, A Wen, DJ Stone, DK Sharma, C Wang, Y Yu, H Liu, Q Shi, ...
JCO Clinical Cancer Informatics 4, 201-209, 2020
|ADEpedia-on-OHDSI: A next generation pharmacovigilance signal detection platform using the OHDSI common data model|
Y Yu, KJ Ruddy, N Hong, S Tsuji, A Wen, ND Shah, G Jiang
Journal of biomedical informatics 91, 103119, 2019
|Leveraging association rule mining to detect pathophysiological mechanisms of chronic kidney disease complicated by metabolic syndrome|
S Peng, Y Fan, L Wang, A Wen, X Liu, H Liu, F Shen
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018
|Evaluation of patient-level retrieval from electronic health record data for a cohort discovery task|
SR Chamberlin, SD Bedrick, AM Cohen, Y Wang, A Wen, S Liu, H Liu, ...
JAMIA open 3 (3), 395-404, 2020
|Clinical concept extraction: a methodology review|
S Fu, D Chen, H He, S Liu, S Moon, KJ Peterson, F Shen, L Wang, ...
Journal of Biomedical Informatics, 103526, 2020
|Adapting and evaluating a deep learning language model for clinical why-question answering|
A Wen, MY Elwazir, S Moon, J Fan
JAMIA Open 3 (1), 16-20, 2020
|Create: Cohort retrieval enhanced by analysis of text from electronic health records using omop common data model|
S Liu, Y Wang, A Wen, L Wang, N Hong, F Shen, S Bedrick, W Hersh, ...
arXiv preprint arXiv:1901.07601, 2019
|An Aberration Detection-Based Approach for Sentinel Syndromic Surveillance of COVID-19 and Other Novel Influenza-Like Illnesses|
A Wen, L Wang, H He, S Liu, S Fu, S Sohn, JA Kugel, VC Kaggal, ...
|Integrating electronic health record data into the ADEpedia-on-OHDSI platform for improved signal detection: a case study of immune-related adverse events|
Y Yu, KJ Ruddy, A Wen, N Zong, S Tsuji, J Chen, ND Shah, G Jiang
AMIA Summits on Translational Science Proceedings 2020, 710, 2020
|Drug–target prediction utilizing heterogeneous bio-linked network embeddings|
N Zong, RSN Wong, Y Yu, A Wen, M Huang, N Li
Briefings in Bioinformatics, 2019