| PANDAseq: paired-end assembler for Illumina sequences AP Masella, AK Bartram, JM Truszkowski, DG Brown, JD Neufeld BMC Bioinformatics 13 (1), 31, 2012 | 2201 | 2012 |
| A communal catalogue reveals Earth¢s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017 | 2185 | 2017 |
| Ecology and exploration of the rare biosphere MDJ Lynch, JD Neufeld Nature Reviews Microbiology 13 (4), 217-229, 2015 | 995 | 2015 |
| Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads AK Bartram, MDJ Lynch, JC Stearns, G Moreno-Hagelsieb, JD Neufeld Applied and Environmental Microbiology 77 (11), 3846-3852, 2011 | 955 | 2011 |
| Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ... Nature Biotechnology 29 (5), 415-420, 2011 | 710 | 2011 |
| DNA stable-isotope probing JD Neufeld, J Vohra, MG Dumont, T Lueders, M Manefield, MW Friedrich, ... Nature Protocols 2 (4), 860-866, 2007 | 524 | 2007 |
| Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice G De Palma, MDJ Lynch, J Lu, VT Dang, Y Deng, J Jury, G Umeh, ... Science Translational Medicine 9 (379), eaaf6397, 2017 | 509 | 2017 |
| Bacterial biogeography of the human digestive tract JC Stearns, MDJ Lynch, DB Senadheera, HC Tenenbaum, MB Goldberg, ... Scientific Reports 1, 170, 2011 | 458 | 2011 |
| Who eats what, where and when? Isotope-labelling experiments are coming of age JD Neufeld, M Wagner, JC Murrell The ISME Journal 1 (2), 103-110, 2007 | 282 | 2007 |
| Methodological considerations for the use of stable isotope probing in microbial ecology JD Neufeld, MG Dumont, J Vohra, JC Murrell Microbial Ecology 53 (3), 435-442, 2007 | 272 | 2007 |
| Evaluating bias of Illumina-based bacterial 16S rRNA gene profiles K Kennedy, MW Hall, MDJ Lynch, G Moreno-Hagelsieb, JD Neufeld Applied and Environmental Microbiology, 2014 | 270 | 2014 |
| Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology EK Binga, RS Lasken, JD Neufeld The ISME Journal 2 (3), 233-241, 2008 | 232 | 2008 |
| Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia AA Ross, KM Müller, JS Weese, JD Neufeld Proceedings of the National Academy of Sciences 115 (25), E5786-E5795, 2018 | 216 | 2018 |
| Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism JD Neufeld, H Schäfer, MJ Cox, R Boden, IR McDonald, JC Murrell The ISME Journal 1 (6), 480-491, 2007 | 205 | 2007 |
| Biogeography of anaerobic ammonia-oxidizing (anammox) bacteria P Sonthiphand, MW Hall, JD Neufeld Frontiers in Microbiology 5, 399, 2014 | 197 | 2014 |
| Denaturing gradient gel electrophoresis (DGGE) for microbial community analysis SJ Green, MB Leigh, JD Neufeld Hydrocarbon and Lipid Microbiology Protocols: Microbial Quantitation …, 2017 | 190 | 2017 |
| Inter-personal diversity and temporal dynamics of dental, tongue, and salivary microbiota in the healthy oral cavity MW Hall, N Singh, KF Ng, DK Lam, MB Goldberg, HC Tenenbaum, ... NPJ Biofilms and Microbiomes 3 (1), 2, 2017 | 187 | 2017 |
| Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system LA Sauder, M Albertsen, K Engel, J Schwarz, PH Nielsen, M Wagner, ... The ISME Journal 11 (5), 1142, 2017 | 183 | 2017 |
| Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm AK Bartram, X Jiang, MDJ Lynch, AP Masella, GW Nicol, J Dushoff, ... FEMS Microbiology Ecology 87 (2), 403-415, 2014 | 183 | 2014 |
| Unexpectedly high bacterial diversity in arctic tundra relative to boreal forest soils, revealed by serial analysis of ribosomal sequence tags JD Neufeld, WW Mohn Applied and Environmental Microbiology 71 (10), 5710-5718, 2005 | 182 | 2005 |
Michael DJ LynchMetagenom Bio Life Science and Department of Biology, University of WaterlooVerified email at uwaterloo.ca
