| SALMON: survival analysis learning with multi-omics neural networks on breast cancer Z Huang, X Zhan, S Xiang, TS Johnson, B Helm, CY Yu, J Zhang, ... Frontiers in genetics 10, 166, 2019 | 191 | 2019 |
| BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes T Wang, TS Johnson, W Shao, Z Lu, BR Helm, J Zhang, K Huang Genome biology 20, 1-15, 2019 | 111 | 2019 |
| Deep learning-based cancer survival prognosis from RNA-seq data: approaches and evaluations Z Huang, TS Johnson, Z Han, B Helm, S Cao, C Zhang, P Salama, ... BMC medical genomics 13, 1-12, 2020 | 73 | 2020 |
| Metamorphosis is induced by food absence rather than a critical weight in the solitary bee, Osmia lignaria BR Helm, JP Rinehart, GD Yocum, KJ Greenlee, JH Bowsher Proceedings of the National Academy of Sciences 114 (41), 10924-10929, 2017 | 46 | 2017 |
| The geometric framework for nutrition reveals interactions between protein and carbohydrate during larval growth in honey bees BR Helm, GP Slater, A Rajamohan, GD Yocum, KJ Greenlee, JH Bowsher Biology open 6 (6), 872-880, 2017 | 35 | 2017 |
| Percent lipid is associated with body size but not task in the bumble bee Bombus impatiens MJ Couvillon, JM Jandt, J Bonds, BR Helm, A Dornhaus Journal of Comparative Physiology A 197, 1097-1104, 2011 | 33 | 2011 |
| Correlation analysis of histopathology and proteogenomics data for breast cancer X Zhan, J Cheng, Z Huang, Z Han, B Helm, X Liu, J Zhang, TF Wang, D Ni, ... Molecular & Cellular Proteomics 18 (8), S37-S51, 2019 | 32 | 2019 |
| Mass and volume growth of an insect tracheal system within a single instar BR Helm, G Davidowitz Journal of Experimental Biology 216 (24), 4703-4711, 2013 | 26 | 2013 |
| Micro-computed tomography of pupal metamorphosis in the solitary bee Megachile rotundata BR Helm, S Payne, JP Rinehart, GD Yocum, JH Bowsher, KJ Greenlee Arthropod structure & development 47 (5), 521-528, 2018 | 19 | 2018 |
| Extended hypoxia in the alfalfa leafcutting bee, Megachile rotundata, increases survival but causes sub-lethal effects H Abdelrahman, JP Rinehart, GD Yocum, KJ Greenlee, BR Helm, ... Journal of insect physiology 64, 81-89, 2014 | 17 | 2014 |
| Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing TS Johnson, S Xiang, BR Helm, ZB Abrams, P Neidecker, R Machiraju, ... Scientific reports 10 (1), 18014, 2020 | 15 | 2020 |
| Body and Wing Allometries Reveal Flight-Fecundity Tradeoff in Response to Larval Provisioning in Osmia lignaria (Hymenoptera: Megachilidae) BR Helm, MA Baldwin, JP Rinehart, GD Yocum, KJ Greenlee, ... Journal of Insect Science 21 (3), 11, 2021 | 12 | 2021 |
| Comparison of the chemical compositions of the cuticle and Dufour¢s gland of two solitary bee species from laboratory and field conditions TL Pitts-Singer, MM Hagen, BR Helm, S Highland, JS Buckner, WP Kemp Journal of chemical ecology 43, 451-468, 2017 | 12 | 2017 |
| Predicting performance and plasticity in the development of respiratory structures and metabolic systems KJ Greenlee, KL Montooth, BR Helm Integrative and Comparative Biology 54 (2), 307-322, 2014 | 12 | 2014 |
| Phenotypic integration in an extended phenotype: among‐individual variation in nest‐building traits of the alfalfa leafcutting bee (Megachile rotundata) R Royauté, ES Wilson, BR Helm, RE Mallinger, J Prasifka, KJ Greenlee, ... Journal of evolutionary biology 31 (7), 944-956, 2018 | 9 | 2018 |
| A common framework for the regulation of growth and size: Stepping away from the trees to see the forest G Davidowitz, BR Helm Integrative Organismal Biology, 207-217, 2014 | 9 | 2014 |
| Gene co-expression networks restructured gene fusion in rhabdomyosarcoma cancers BR Helm, X Zhan, PH Pandya, ME Murray, KE Pollok, JL Renbarger, ... Genes 10 (9), 665, 2019 | 8 | 2019 |
| Evidence of a hemolymph-born factor that induces onset of maturation in Manduca sexta larvae BR Helm, G Davidowitz Journal of insect physiology 78, 78-86, 2015 | 8 | 2015 |
| SALMON: survival analysis learning with multi-omics neural networks on breast cancer. Front Genet 10: 166 Z Huang, X Zhan, S Xiang, TS Johnson, B Helm, CY Yu, J Zhang, ... | 5 | 2019 |
| Integration of Mouse and Human Single-cell RNA Sequencing Infers Spatial Cell-type Composition in Human Brains TS Johnson, ZB Abrams, BR Helm, P Neidecker, R Machiraju, Y Zhang, ... bioRxiv, 527499, 2019 | 2 | 2019 |
