| Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0 J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ... Nature protocols 6 (9), 1290, 2011 | 1434 | 2011 |
| BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions J Schellenberger, JO Park, TM Conrad, BØ Palsson BMC bioinformatics 11 (1), 1-10, 2010 | 606 | 2010 |
| Large-scale in silico modeling of metabolic interactions between cell types in the human brain NE Lewis, G Schramm, A Bordbar, J Schellenberger, MP Andersen, ... Nature biotechnology 28 (12), 1279-1285, 2010 | 258 | 2010 |
| Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions A Bordbar, NE Lewis, J Schellenberger, BØ Palsson, N Jamshidi Molecular systems biology 6 (1), 422, 2010 | 256 | 2010 |
| Use of randomized sampling for analysis of metabolic networks J Schellenberger, BØ Palsson Journal of biological chemistry 284 (9), 5457-5461, 2009 | 251 | 2009 |
| Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ... Metabolic engineering 12 (3), 173-186, 2010 | 245 | 2010 |
| Elimination of thermodynamically infeasible loops in steady-state metabolic models J Schellenberger, NE Lewis, BØ Palsson Biophysical Journal 100 (3), 544-553, 2011 | 193 | 2011 |
| Uniform sampling of steady-state flux spaces: means to design experiments and to interpret enzymopathies ND Price, J Schellenberger, BO Palsson Biophysical journal 87 (4), 2172-2186, 2004 | 170 | 2004 |
| Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA Annals of Oncology, 2020 | 152 | 2020 |
| Functional characterization of alternate optimal solutions of Escherichia coli's transcriptional and translational machinery I Thiele, RMT Fleming, A Bordbar, J Schellenberger, BØ Palsson Biophysical journal 98 (10), 2072-2081, 2010 | 72 | 2010 |
| Minimal metabolic pathway structure is consistent with associated biomolecular interactions A Bordbar, H Nagarajan, NE Lewis, H Latif, A Ebrahim, S Federowicz, ... Molecular systems biology 10 (7), 737, 2014 | 45 | 2014 |
| Predicting outcomes of steady-state 13 C isotope tracing experiments using Monte Carlo sampling J Schellenberger, DC Zielinski, W Choi, S Madireddi, V Portnoy, DA Scott, ... BMC systems biology 6 (1), 1-14, 2012 | 36 | 2012 |
| Genome-wide cell-free DNA (cfDNA) methylation signatures and effect on tissue of origin (TOO) performance. MC Liu, A Jamshidi, O Venn, AP Fields, MC Maher, G Cann, H Amini, ... Journal of Clinical Oncology 37 (15_suppl), 3049-3049, 2019 | 15 | 2019 |
| Expanding an audience for an advertising campaign J Schellenberger, S Kshetramade, K Cao, A Kannan, K Liu, H Liu, C Li, ... US Patent App. 14/643,431, 2016 | 6 | 2016 |
| Monte Carlo simulation in systems biology J Schellenberger UC San Diego, 2010 | 5 | 2010 |
| Identifying potential computer system problems using machine learning techniques J Schellenberger, H Gao US Patent 10,152,363, 2018 | 3 | 2018 |
| Online advertisement forecasting using targeted messages J Chen, T Cui, Z Deng, S You, D Kumar, D Guangyu, S Kshetramade, ... US Patent App. 14/642,586, 2016 | 3 | 2016 |
| Jan Schellenberger, Nathan E. Lewis, and Bernhard Ø. Palsson S Lecuyer, R Rusconi, Y Shen, A Forsyth, H Vlamakis, R Kolter, HA Stone Biophysical Journal 100, 1381, 2011 | 1 | 2011 |
| Model-based featurization and classification AP Fields, JF Beausang, OC Venn, A Jamshidi, MC MAHER, Q Liu, ... US Patent App. 15/931,022, 2020 | | 2020 |
| Using Machine Learning to Detect Cancer Early J Schellenberger Proceedings of the 26th ACM SIGKDD International Conference on Knowledge …, 2020 | | 2020 |
Bernhard PalssonUCSDVerified email at eng.ucsd.edu
