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David A. Duchêne
David A. Duchêne
Associate Professor, Department of Public Health, University of Copenhagen
Verified email at sund.ku.dk - Homepage
Title
Cited by
Cited by
Year
The performance of the date-randomization test in phylogenetic analyses of time-structured virus data
S Duchêne, D Duchêne, EC Holmes, SYW Ho
Molecular Biology and Evolution 32 (7), 1895-1906, 2015
1602015
Bayesian molecular dating: opening up the black box
L Bromham, S Duchêne, X Hua, AM Ritchie, DA Duchêne, SYW Ho
Biological Reviews 93 (2), 1165-1191, 2018
1402018
Bayesian evaluation of temporal signal in measurably evolving populations
S Duchene, P Lemey, T Stadler, SYW Ho, DA Duchene, V Dhanasekaran, ...
Molecular Biology and Evolution 37 (11), 3363-3379, 2020
992020
Simulating and detecting autocorrelation of molecular evolutionary rates among lineages
SYW Ho, S Duchêne, D Duchêne
Molecular ecology resources 15 (4), 688-696, 2015
922015
Analysis of phylogenomic tree space resolves relationships among marsupial families
DA Duchêne, JG Bragg, S Duchêne, LE Neaves, S Potter, C Moritz, ...
Systematic Biology 67 (3), 400-412, 2018
912018
Rates of molecular evolution and diversification in plants: chloroplast substitution rates correlate with species-richness in the Proteaceae
D Duchene, L Bromham
BMC evolutionary biology 13, 1-11, 2013
682013
Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts
JA Rasmussen, KR Villumsen, DA Duchêne, LC Puetz, TO Delmont, ...
Communications Biology 4 (1), 579, 2021
642021
Accounting for uncertainty in the evolutionary timescale of green plants through clock-partitioning and fossil calibration strategies
Y Nie, CSP Foster, T Zhu, R Yao, DA Duchêne, SYW Ho, B Zhong
Systematic biology 69 (1), 1-16, 2020
592020
Ancient and modern genomes unravel the evolutionary history of the rhinoceros family
S Liu, MV Westbury, N Dussex, KJ Mitchell, MHS Sinding, PD Heintzman, ...
Cell 184 (19), 4874-4885. e16, 2021
552021
A simulation-based evaluation of tip-dating under the fossilized birth-death process
A Luo, DA Duchêne, C Zhang, CD Zhu, SYW Ho
Systematic Biology 69 (2), 325–344, 2020
522020
Evaluating the adequacy of molecular clock models using posterior predictive simulations
DA Duchêne, S Duchêne, EC Holmes, SYW Ho
Molecular Biology and Evolution 32 (11), 2986-2995, 2015
492015
Tree imbalance causes a bias in phylogenetic estimation of evolutionary timescales using heterochronous sequences
D Duchêne, S Duchêne, SYW Ho
Molecular ecology resources 15 (4), 785-794, 2015
452015
Linking branch lengths across sets of loci provides the highest statistical support for phylogenetic inference
DA Duchêne, KJ Tong, CSP Foster, S Duchêne, R Lanfear, SYW Ho
Molecular Biology and Evolution 37 (4), 1202-1210, 2020
442020
Evidence for concerted and mosaic brain evolution in dragon lizards
D Hoops, M Vidal-García, JFP Ullmann, AL Janke, T Stait-Gardner, ...
Brain Behavior and Evolution 90 (3), 211-223, 2017
402017
New statistical criteria detect phylogenetic bias caused by compositional heterogeneity
DA Duchêne, S Duchêne, SYW Ho
Molecular Biology and Evolution 34 (6), 1529-1534, 2017
392017
Phylodynamic model adequacy using posterior predictive simulations
S Duchene, R Bouckaert, DA Duchene, T Stadler, AJ Drummond
Systematic biology 68 (2), 358-364, 2019
362019
Phylogenetic patterns in the geographic distributions of birds support the tropical conservatism hypothesis
DA Duchêne, M Cardillo
Global Ecology and Biogeography 24 (11), 1261-1268, 2015
362015
PhyloMAd: efficient assessment of phylogenomic model adequacy
DA Duchêne, S Duchêne, SYW Ho
Bioinformatics 34 (13), 2300-2301, 2018
332018
A comparison of methods for estimating substitution rates from ancient DNA sequence data
KJ Tong, DA Duchêne, S Duchêne, JL Geoghegan, SYW Ho
BMC evolutionary biology 18, 1-10, 2018
262018
Phylogenetic estimates of diversification rate are affected by molecular rate variation
DA Duchêne, X Hua, L Bromham
Journal of Evolutionary Biology 30 (10), 1884-1897, 2017
242017
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