Vebjorn Ljosa
Vebjorn Ljosa
Computational biologist, Broad Institute of MIT and Harvard
Verified email at broad.mit.edu - Homepage
Title
Cited by
Cited by
Year
Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software
L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ...
Bioinformatics 27 (8), 1179-1180, 2011
8792011
Scoring diverse cellular morphologies in image-based screens with iterative feedback and machine learning
TR Jones, AE Carpenter, MR Lamprecht, J Moffat, SJ Silver, JK Grenier, ...
Proceedings of the National Academy of Sciences 106 (6), 1826-1831, 2009
3782009
Annotated high-throughput microscopy image sets for validation.
V Ljosa, KL Sokolnicki, AE Carpenter
Nature methods 9 (7), 637-637, 2012
2762012
An image analysis toolbox for high-throughput C. elegans assays
C Wählby, L Kamentsky, ZH Liu, T Riklin-Raviv, AL Conery, EJ O'rourke, ...
Nature methods 9 (7), 714-716, 2012
1412012
Toward performance-diverse small-molecule libraries for cell-based phenotypic screening using multiplexed high-dimensional profiling
MJ Wawer, K Li, SM Gustafsdottir, V Ljosa, NE Bodycombe, MA Marton, ...
Proceedings of the National Academy of Sciences 111 (30), 10911-10916, 2014
1392014
Multiplex cytological profiling assay to measure diverse cellular states
SM Gustafsdottir, V Ljosa, KL Sokolnicki, JA Wilson, D Walpita, MM Kemp, ...
PloS one 8 (12), e80999, 2013
1332013
APLA: Indexing arbitrary probability distributions
V Ljosa, AK Singh
2007 IEEE 23rd International Conference on Data Engineering, 946-955, 2007
1232007
Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment
V Ljosa, PD Caie, R Ter Horst, KL Sokolnicki, EL Jenkins, S Daya, ...
Journal of biomolecular screening 18 (10), 1321-1329, 2013
1212013
Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening
V Ljosa, AE Carpenter
PLoS comput biol 5 (12), e1000603, 2009
1112009
CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets
D Dao, AN Fraser, J Hung, V Ljosa, S Singh, AE Carpenter
Bioinformatics 32 (20), 3210-3212, 2016
832016
Top-k spatial joins of probabilistic objects
V Ljosa, AK Singh
2008 IEEE 24th International Conference on Data Engineering, 566-575, 2008
752008
A dataset of images and morphological profiles of 30 000 small-molecule treatments using the Cell Painting assay
MA Bray, SM Gustafsdottir, MH Rohban, S Singh, V Ljosa, KL Sokolnicki, ...
Gigascience 6 (12), giw014, 2017
632017
Vivo: Visual vocabulary construction for mining biomedical images
A Bhattacharya, V Ljosa, JY Pan, MR Verardo, H Yang, C Faloutsos, ...
Fifth IEEE International Conference on Data Mining (ICDM'05), 8 pp., 2005
492005
Indexing spatially sensitive distance measures using multi-resolution lower bounds
V Ljosa, A Bhattacharya, AK Singh
International Conference on Extending Database Technology, 865-883, 2006
392006
Resolving clustered worms via probabilistic shape models
C Wählby, T Riklin-Raviv, V Ljosa, AL Conery, P Golland, FM Ausubel, ...
2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro …, 2010
332010
Morphological profiles of RNAi-induced gene knockdown are highly reproducible but dominated by seed effects
S Singh, X Wu, V Ljosa, MA Bray, F Piccioni, DE Root, JG Doench, ...
PloS one 10 (7), e0131370, 2015
272015
Speeding up whole-genome alignment by indexing frequency vectors
T Kahveci, V Ljosa, AK Singh
Bioinformatics 20 (13), 2122-2134, 2004
272004
High-throughput screens for fluorescent dye discovery
V Ljosa, AE Carpenter
Trends in biotechnology 26 (10), 527-530, 2008
232008
Probabilistic segmentation and analysis of horizontal cells
V Ljosa, AK Singh
Sixth International Conference on Data Mining (ICDM'06), 980-985, 2006
222006
Morphology-guided graph search for untangling objects: C. elegans analysis
TR Raviv, V Ljosa, AL Conery, FM Ausubel, AE Carpenter, P Golland, ...
International Conference on Medical Image Computing and Computer-Assisted …, 2010
212010
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Articles 1–20