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Marianna Rapsomaniki
Marianna Rapsomaniki
Other namesMaria Anna Rapsomaniki
University of Lausanne (UNIL), Lausanne University Hospital (CHUV)
Verified email at unil.ch
Title
Cited by
Cited by
Year
A single-cell atlas of the tumor and immune ecosystem of human breast cancer
J Wagner, MA Rapsomaniki, S Chevrier, T Anzeneder, C Langwieder, ...
Cell 177 (5), 1330-1345. e18, 2019
6642019
easyFRAP: an interactive, easy-to-use tool for qualitative and quantitative analysis of FRAP data
MA Rapsomaniki, P Kotsantis, IE Symeonidou, NN Giakoumakis, ...
Bioinformatics 28 (13), 1800-1801, 2012
1732012
EasyFRAP-web: a web-based tool for the analysis of fluorescence recovery after photobleaching data
G Koulouras, A Panagopoulos, MA Rapsomaniki, NN Giakoumakis, ...
Nucleic acids research 46 (W1), W467-W472, 2018
1322018
Quantification of tumor heterogeneity: from data acquisition to metric generation
A Kashyap, MA Rapsomaniki, V Barros, A Fomitcheva-Khartchenko, ...
Trends in Biotechnology 40 (6), 647-676, 2022
502022
CK1δ restrains lipin-1 induction, lipid droplet formation and cell proliferation under hypoxia by reducing HIF-1α/ARNT complex formation
M Kourti, G Ikonomou, NN Giakoumakis, MA Rapsomaniki, U Landegren, ...
Cellular signalling 27 (6), 1129-1140, 2015
492015
CellCycleTRACER accounts for cell cycle and volume in mass cytometry data
MA Rapsomaniki, XK Lun, S Woerner, M Laumanns, B Bodenmiller, ...
Nature Communications 9 (1), 632, 2018
402018
Multi-step loading of human minichromosome maintenance proteins in live human cells
IE Symeonidou, P Kotsantis, V Roukos, MA Rapsomaniki, HE Grecco, ...
Journal of Biological Chemistry 288 (50), 35852-35867, 2013
392013
Analysis of protein kinetics using fluorescence recovery after photobleaching (FRAP)
NN Giakoumakis, MA Rapsomaniki, Z Lygerou
Light Microscopy: Methods and Protocols, 243-267, 2017
272017
IPP complex reinforces adhesion by relaying tension-dependent signals to inhibit integrin turnover
KM Vakaloglou, G Chrysanthis, MA Rapsomaniki, Z Lygerou, CG Zervas
Cell reports 14 (11), 2668-2682, 2016
212016
Inference of protein kinetics by stochastic modeling and simulation of fluorescence recovery after photobleaching experiments
MA Rapsomaniki, E Cinquemani, NN Giakoumakis, P Kotsantis, ...
Bioinformatics 31 (3), 355-362, 2015
162015
ATHENA: analysis of tumor heterogeneity from spatial omics measurements
AL Martinelli, MA Rapsomaniki
Bioinformatics 38 (11), 3151-3153, 2022
142022
Matching single cells across modalities with contrastive learning and optimal transport
F Gossi, P Pati, P Chouvardas, AL Martinelli, M Kruithof-de Julio, ...
Briefings in bioinformatics 24 (3), bbad130, 2023
82023
Inference of the three-dimensional chromatin structure and its temporal behavior
BC Cristescu, Z Borsos, J Lygeros, MR Martínez, MA Rapsomaniki
arXiv preprint arXiv:1811.09619, 2018
82018
Towards quantum-enabled cell-centric therapeutics
S Basu, J Born, A Bose, S Capponi, D Chalkia, TA Chan, H Doga, ...
arXiv preprint arXiv:2307.05734, 2023
62023
A novel pre-miRNA classification approach for the prediction of microRNA genes
KA Theofilatos, DA Kleftogiannis, MAV Rapsomaniki, VA Haidinis, ...
Proceedings of the 10th IEEE International Conference on Information …, 2010
52010
In silico analysis of DNA re-replication across a complete genome reveals cell-to-cell heterogeneity and genome plasticity
MA Rapsomaniki, S Maxouri, P Nathanailidou, MR Garrastacho, ...
NAR genomics and bioinformatics 3 (1), lqaa112, 2021
42021
Recurrent autoencoder for chromatin 3D structure prediction
MA Rapsomaniki, BC Cristescu, MR Martinez
US Patent 11,475,275, 2022
32022
A novel pipeline method for the preprocessing of Mass spectrometry proteomics data
MAV Rapsomaniki, PG Zerefos, KA Theofilatos, SD Likothanassis, ...
Proceedings of the 10th IEEE International Conference on Information …, 2010
32010
Hybrid quantum-classical graph neural networks for tumor classification in digital pathology
A Ray, D Madan, S Patil, MA Rapsomaniki, P Pati
arXiv preprint arXiv:2310.11353, 2023
22023
Spatial protein heterogeneity analysis in frozen tissues to evaluate tumor heterogeneity
A Fomitcheva-Khartchenko, MA Rapsomaniki, B Sobottka, P Schraml, ...
Plos one 16 (11), e0259332, 2021
22021
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Articles 1–20