Kevin J. Liu
Kevin J. Liu
Associate Professor, Department of Computer Science and Engineering, Michigan State University
Verified email at - Homepage
Cited by
Cited by
Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees
K Liu, S Raghavan, S Nelesen, CR Linder, T Warnow
Science 324 (5934), 1561-1564, 2009
SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
K Liu, TJ Warnow, MT Holder, SM Nelesen, J Yu, AP Stamatakis, ...
Systematic biology 61 (1), 90, 2012
Maximum likelihood inference of reticulate evolutionary histories
Y Yu, J Dong, KJ Liu, L Nakhleh
Proceedings of the National Academy of Sciences 111 (46), 16448-16453, 2014
RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation
K Liu, CR Linder, T Warnow
PloS one 6 (11), e27731, 2011
Interspecific introgressive origin of genomic diversity in the house mouse
KJ Liu, E Steinberg, A Yozzo, Y Song, MH Kohn, L Nakhleh
Proceedings of the National Academy of Sciences 112 (1), 196-201, 2015
Multiple sequence alignment: a major challenge to large-scale phylogenetics
K Liu, CR Linder, T Warnow
PLoS currents 2, 2010
DACTAL: divide-and-conquer trees (almost) without alignments
S Nelesen, K Liu, LS Wang, CR Linder, T Warnow
Bioinformatics 28 (12), i274-i282, 2012
An HMM-based comparative genomic framework for detecting introgression in eukaryotes
KJ Liu, J Dai, K Truong, Y Song, MH Kohn, L Nakhleh
PLoS computational biology 10 (6), e1003649, 2014
The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses
S Nelesen, K Liu, D Zhao, CR Linder, T Warnow
Biocomputing 2008, 25-36, 2008
A scalability study of phylogenetic network inference methods using empirical datasets and simulations involving a single reticulation
HA Hejase, KJ Liu
BMC bioinformatics 17, 1-12, 2016
Barking up the wrong treelength: the impact of gap penalty on alignment and tree accuracy
K Liu, S Nelesen, S Raghavan, CR Linder, T Warnow
IEEE/ACM Transactions on Computational Biology and Bioinformatics 6 (1), 7-21, 2008
Large-scale multiple sequence alignment and tree estimation using SATé
K Liu, T Warnow
Multiple Sequence Alignment Methods, 219-244, 2014
A performance study of the impact of recombination on species tree analysis
Z Wang, KJ Liu
BMC genomics 17 (10), 165-174, 2016
Fastnet: fast and accurate statistical inference of phylogenetic networks using large-scale genomic sequence data
HA Hejase, N VandePol, GM Bonito, KJ Liu
Comparative Genomics: 16th International Conference, RECOMB-CG 2018, Magog …, 2018
Treelength optimization for phylogeny estimation
K Liu, T Warnow
PLoS One 7 (3), e33104, 2012
Benchmark datasets and software for developing and testing methods for large-scale multiple sequence alignment and phylogenetic inference
CR Linder, R Suri, K Liu, T Warnow
PLoS currents 2, 2010
Mapping the genomic architecture of adaptive traits with interspecific introgressive origin: a coalescent-based approach
HA Hejase, KJ Liu
Bmc Genomics 17, 41-57, 2016
Non-parametric and semi-parametric support estimation using SEquential RESampling random walks on biomolecular sequences
W Wang, J Smith, HA Hejase, KJ Liu
Algorithms for Molecular Biology 15 (1), 1-15, 2020
Disentangling population history and character evolution among hybridizing lineages
SP Mullen, NW VanKuren, W Zhang, S Nallu, EB Kristiansen, Q Wuyun, ...
Molecular Biology and Evolution 37 (5), 1295-1305, 2020
Scalable statistical introgression mapping using approximate coalescent-based inference
Q Wuyun, NW VanKuren, M Kronforst, SP Mullen, KJ Liu
Proceedings of the 10th ACM International Conference on Bioinformatics …, 2019
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