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Denis C. Bauer
Denis C. Bauer
CSIRO eHealth - Biomedical Informatics Group - Transformational Bioinformatics Team
Verified email at csiro.au
Title
Cited by
Cited by
Year
Genome-wide analyses identify KIF5A as a novel ALS gene
A Nicolas, KP Kenna, AE Renton, N Ticozzi, F Faghri, R Chia, ...
Neuron 97 (6), 1267-1288, 2018
6332018
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
Nature genetics 41 (5), 553-562, 2009
4202009
A comparative study of techniques for differential expression analysis on RNA-Seq data
ZH Zhang, DJ Jhaveri, VM Marshall, DC Bauer, J Edson, RK Narayanan, ...
PloS one 9 (8), e103207, 2014
3942014
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations
PC Taberlay, J Achinger-Kawecka, ATL Lun, FA Buske, K Sabir, ...
Genome research 26 (6), 719-731, 2016
3552016
Triplexator: detecting nucleic acid triple helices in genomic and transcriptomic data
FA Buske, DC Bauer, JS Mattick, TL Bailey
Genome research 22 (7), 1372-1381, 2012
2222012
Assigning roles to DNA regulatory motifs using comparative genomics
FA Buske, M Bodén, DC Bauer, TL Bailey
Bioinformatics 26 (7), 860-866, 2010
2142010
Genetic correlation between amyotrophic lateral sclerosis and schizophrenia
RL McLaughlin, D Schijven, W Van Rheenen, KR Van Eijk, M O’brien, ...
Nature communications 8 (1), 14774, 2017
1422017
The current state and future of CRISPR-Cas9 gRNA design tools
LOW Wilson, AR O’Brien, DC Bauer
Frontiers in pharmacology 9, 749, 2018
1342018
Early life events influence whole-of-life metabolic health via gut microflora and gut permeability
CA Kerr, DM Grice, CD Tran, DC Bauer, D Li, P Hendry, GN Hannan
Critical reviews in microbiology 41 (3), 326-340, 2015
1172015
Cpipe: a shared variant detection pipeline designed for diagnostic settings
SP Sadedin, H Dashnow, PA James, M Bahlo, DC Bauer, A Lonie, ...
Genome medicine 7, 1-10, 2015
1012015
Blue: correcting sequencing errors using consensus and context
P Greenfield, K Duesing, A Papanicolaou, DC Bauer
Bioinformatics 30 (19), 2723-2732, 2014
992014
Evaluation of computational programs to predict HLA genotypes from genomic sequencing data
DC Bauer, A Zadoorian, LOW Wilson, ...
Briefings in bioinformatics 19 (2), 179-187, 2018
912018
Evidence for polygenic and oligogenic basis of Australian sporadic amyotrophic lateral sclerosis
EP McCann, L Henden, JA Fifita, KY Zhang, N Grima, DC Bauer, SCM Fat, ...
Journal of medical genetics 58 (2), 87-95, 2021
892021
Optimized nickase-and nuclease-based prime editing in human and mouse cells
F Adikusuma, C Lushington, J Arudkumar, GI Godahewa, YCJ Chey, ...
Nucleic acids research 49 (18), 10785-10795, 2021
642021
A comparative study of multi-omics integration tools for cancer driver gene identification and tumour subtyping
A Sathyanarayanan, R Gupta, EW Thompson, DR Nyholt, DC Bauer, ...
Briefings in bioinformatics 21 (6), 1920-1936, 2020
642020
Supporting pandemic response using genomics and bioinformatics: A case study on the emergent SARS‐CoV‐2 outbreak
DC Bauer, AP Tay, LOW Wilson, D Reti, C Hosking, AJ McAuley, E Pharo, ...
Transboundary and emerging diseases 67 (4), 1453-1462, 2020
532020
High activity target-site identification using phenotypic independent CRISPR-Cas9 core functionality
LOW Wilson, D Reti, AR O'Brien, RA Dunne, DC Bauer
The CRISPR Journal 1 (2), 182-190, 2018
502018
Artificial intelligence and machine learning in bioinformatics
K Lai, N Twine, A O’brien, Y Guo, D Bauer
Encyclopedia of Bioinformatics and Computational Biology: ABC of …, 2018
492018
Gut permeability, its interaction with gut microflora and effects on metabolic health are mediated by the lymphatics system, liver and bile acid
CD Tran, DM Grice, B Wade, CA Kerr, DC Bauer, D Li, GN Hannan
Future microbiology 10 (8), 1339-1353, 2015
462015
Monozygotic twins and triplets discordant for amyotrophic lateral sclerosis display differential methylation and gene expression
IS Tarr, EP McCann, B Benyamin, TJ Peters, NA Twine, KY Zhang, ...
Scientific reports 9 (1), 8254, 2019
442019
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