Oscar Dias
Oscar Dias
Verified email at ceb.uminho.pt - Homepage
Title
Cited by
Cited by
Year
Reconstructing genome-scale metabolic models with merlin
O Dias, M Rocha, EC Ferreira, I Rocha
Nucleic acids research 43 (8), 3899-3910, 2015
902015
Correlation between sludge settling ability and image analysis information using partial least squares
DP Mesquita, O Dias, AMA Dias, AL Amaral, EC Ferreira
Analytica chimica acta 642 (1-2), 94-101, 2009
592009
Monitoring of activated sludge settling ability through image analysis: validation on full-scale wastewater treatment plants
DP Mesquita, O Dias, AL Amaral, EC Ferreira
Bioprocess and biosystems engineering 32 (3), 361-367, 2009
542009
iOD907, the first genome‐scale metabolic model for the milk yeast Kluyveromyces lactis
O Dias, R Pereira, AK Gombert, EC Ferreira, I Rocha
Biotechnology Journal 9 (6), 776-790, 2014
392014
A comparison between bright field and phase-contrast image analysis techniques in activated sludge morphological characterization
DP Mesquita, O Dias, AL Amaral, EC Ferreira
Microscopy Society of America, 2010
252010
Staphylococci phages display vast genomic diversity and evolutionary relationships
H Oliveira, M Sampaio, LDR Melo, O Dias, WH Pope, GF Hatfull, ...
BMC genomics 20 (1), 357, 2019
242019
Merlin: Metabolic models reconstruction using genome-scale information
O Dias, M Rocha, EC Ferreira, I Rocha
IFAC Proceedings Volumes 43 (6), 120-125, 2010
232010
Genome-wide metabolic (re-) annotation of Kluyveromyces lactis
O Dias, AK Gombert, EC Ferreira, I Rocha
BMC genomics 13 (1), 517, 2012
182012
Genome-wide semi-automated annotation of transporter systems
O Dias, D Gomes, P Vilaça, J Cardoso, M Rocha, EC Ferreira, I Rocha
IEEE/ACM transactions on computational biology and bioinformatics 14 (2 …, 2016
152016
Genome-wide metabolic re-annotation of Ashbya gossypii: new insights into its metabolism through a comparative analysis with Saccharomyces cerevisiae and Kluyveromyces lactis
D Gomes, TQ Aguiar, O Dias, EC Ferreira, L Domingues, I Rocha
BMC genomics 15 (1), 810, 2014
132014
Systems biology in fungi
O Dias, I Rocha
Molecular Biology of Food and Water Borne Mycotoxigenic and Mycotic Fungi, 69-92, 2015
122015
Dilution and magnification effects on image analysis applications in activated sludge characterization
DP Mesquita, O Dias, RAV Elias, AL Amaral, EC Ferreira
Microscopy and Microanalysis 16 (5), 561-568, 2010
112010
Reconstructing high-quality large-scale metabolic models with merlin
O Dias, M Rocha, EC Ferreira, I Rocha
Metabolic Network Reconstruction and Modeling, 1-36, 2018
102018
Relationship between sludge volume index and biomass structure within activated sludge systems
DP Mesquita, O Dias, AL Amaral, EC Ferreira
102008
iDS372, a phenotypically reconciled model for the metabolism of Streptococcus pneumoniae strain R6
O Dias, J Saraiva, C Faria, M Ramirez, F Pinto, I Rocha
Frontiers in microbiology 10, 1283, 2019
92019
Predicting promoters in phage genomes using PhagePromoter
M Sampaio, M Rocha, H Oliveira, O Dias
Bioinformatics 35 (24), 5301-5302, 2019
82019
Data Integration Issues in the Reconstruction of the Genome-Scale Metabolic Model of Zymomonas Mobillis
JP Pinto, O Dias, A Lourenço, S Carneiro, EC Ferreira, I Rocha, M Rocha
2nd International Workshop on Practical Applications of Computational …, 2009
62009
Genome-Scale Metabolic Model of the Human Pathogen Candida albicans: A Promising Platform for Drug Target Prediction
R Viana, O Dias, D Lagoa, M Galocha, I Rocha, MC Teixeira
Journal of Fungi 6 (3), 171, 2020
52020
A tailspike with exopolysaccharide depolymerase activity from a new Providencia stuartii phage makes multidrug-resistant bacteria susceptible to serum-mediated killing
H Oliveira, G Pinto, B Mendes, O Dias, H Hendrix, E Akturk, JP Noben, ...
Applied and Environmental Microbiology 86 (13), e00073-20, 2020
52020
A Tailspike with Exopolysaccharide Depolymerase Activity from a New Providencia stuartii Phage Makes Multidrug-Resistant Bacteria Susceptible to Serum-Mediated Killing
H Oliveira, G Pinto, B Mendes, O Dias, H Hendrix, E Akturk, JP Noben, ...
Applied and Environmental Microbiology 86 (13), 2020
52020
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