Riet De Smet
Riet De Smet
Postdoc department of Plant Systems Biology (Ghent University)
Verified email at psb.vib-ugent.be
Title
Cited by
Cited by
Year
Advantages and limitations of current network inference methods
R De Smet, K Marchal
Nature Reviews Microbiology 8 (10), 717-729, 2010
4952010
Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants
R De Smet, KL Adams, K Vandepoele, MCE Van Montagu, S Maere, ...
Proceedings of the National Academy of Sciences, 2013
2472013
Gene duplicability of core genes is highly consistent across all angiosperms
Z Li, J Defoort, S Tasdighian, S Maere, Y Van de Peer, R De Smet
The Plant Cell, 2016
1222016
Redundancy and rewiring of genetic networks following genome-wide duplication events
R De Smet, Y Van de Peer
Current opinion in plant biology 15 (2), 168-176, 2012
1002012
Module networks revisited: computational assessment and prioritization of model predictions
A Joshi, R De Smet, K Marchal, Y Van de Peer, T Michoel
Bioinformatics 25 (4), 490-496, 2009
962009
MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes
S Chamala, N García, GT Godden, V Krishnakumar, IE Jordon‐Thaden, ...
Applications in Plant Sciences 3 (4), 1400115, 2015
732015
Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks
T Michoel, R De Smet, A Joshi, Y Van de Peer, K Marchal
BMC systems biology 3 (1), 49, 2009
692009
Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli
P Meysman, TH Dang, K Laukens, R De Smet, Y Wu, K Marchal, ...
Nucleic acids research 39 (2), e6-e6, 2011
532011
Lack of GLYCOLATE OXIDASE1, but not GLYCOLATE OXIDASE2, attenuates the photorespiratory phenotype of CATALASE2-deficient Arabidopsis
P Kerchev, C Waszczak, A Lewandowska, P Willems, A Shapiguzov, Z Li, ...
Plant physiology 171 (3), 1704-1719, 2016
512016
COLOMBOS: access port for cross-platform bacterial expression compendia
K Engelen, Q Fu, P Meysman, A Sánchez-Rodríguez, R De Smet, ...
PLoS One 6 (7), e20938, 2011
312011
Query-based biclustering of gene expression data using Probabilistic Relational Models
H Zhao, L Cloots, T Van den Bulcke, Y Wu, R De Smet, V Storms, ...
BMC bioinformatics 12 (1), 1-11, 2011
212011
Coordinated functional divergence of genes after genome duplication in Arabidopsis thaliana
R De Smet, E Sabaghian, Z Li, Y Saeys, Y Van de Peer
The Plant Cell 29 (11), 2786-2800, 2017
202017
Conservation of nonsense-mediated mRNA decay complex components throughout eukaryotic evolution
B Causier, Z Li, R De Smet, JPB Lloyd, Y Van de Peer, B Davies
Scientific reports 7 (1), 1-12, 2017
142017
An ensemble biclustering approach for querying gene expression compendia with experimental lists
R De Smet, K Marchal
Bioinformatics 27 (14), 1948-1956, 2011
112011
Reverse-engineering transcriptional modules from gene expression data
T Michoel, R De Smet, A Joshi, K Marchal, Y Van de Peer
arXiv preprint arXiv:0904.1298, 2009
72009
An ensemble method for querying gene expression compendia with experimental lists
R De Smet, K Marchal
2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2010
12010
LARGE-SCALE BIOLOGY
Y Van de Peer, R De Smet
2016
Quantifying expression divergence of duplicated genes with microarrays
K Van den Berge, R De Smet, Y Van de Peer, L Clement
23rd Annual meeting of the Belgian Statistical Society, 2015
2015
Query-based Biclustering of Gene Expression Data using Probabilistic Relational Models
L Cloots, H Zhao, T Van den Bulcke, Y Wu, R De Smet, V Storms, ...
Machine Learning in Systems Biology, 119, 2010
2010
INFECTIOUS DISEASE INFORMATICS
EP Ivanova, A Kurilenko, F Wang, RJ Crawford, R De Smet, K Lemmens, ...
2010
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Articles 1–20