| scClassify: sample size estimation and multiscale classification of cells using single and multiple reference Y Lin, Y Cao, HJ Kim, A Salim, TP Speed, DM Lin, P Yang, JYH Yang Molecular systems biology 16 (6), e9389, 2020 | 80 | 2020 |
| CiteFuse enables multi-modal analysis of CITE-seq data HJ Kim, Y Lin, TA Geddes, JYH Yang, P Yang Bioinformatics 36 (14), 4137-4143, 2020 | 73 | 2020 |
| Sec62 protein mediates membrane insertion and orientation of moderately hydrophobic signal anchor proteins in the endoplasmic reticulum (ER) JH Reithinger, JEH Kim, H Kim Journal of Biological Chemistry 288 (25), 18058-18067, 2013 | 59 | 2013 |
| PhosR enables processing and functional analysis of phosphoproteomic data HJ Kim, T Kim, NJ Hoffman, D Xiao, DE James, SJ Humphrey, P Yang Cell reports 34 (8), 2021 | 55 | 2021 |
| The Sec62–Sec63 translocon facilitates translocation of the C-terminus of membrane proteins S Jung, JEH Kim, JH Reithinger, H Kim Journal of cell science 127 (19), 4270-4278, 2014 | 41 | 2014 |
| Differentiation of brain and retinal organoids from confluent cultures of pluripotent stem cells connected by nerve-like axonal projections of optic origin M Fernando, S Lee, JR Wark, D Xiao, BY Lim, M O’Hara-Wright, HJ Kim, ... Stem Cell Reports 17 (6), 1476-1492, 2022 | 23 | 2022 |
| Uncovering cell identity through differential stability with Cepo HJ Kim, K Wang, C Chen, Y Lin, PPL Tam, DM Lin, JYH Yang, P Yang Nature Computational Science 1 (12), 784-790, 2021 | 17 | 2021 |
| scReClassify: post hoc cell type classification of single-cell rNA-seq data T Kim, K Lo, TA Geddes, HJ Kim, JYH Yang, P Yang BMC genomics 20, 1-10, 2019 | 17 | 2019 |
| Signaling heterogeneity is defined by pathway architecture and intercellular variability in protein expression D Norris, P Yang, SY Shin, AL Kearney, HJ Kim, T Geddes, AM Senior, ... Iscience 24 (2), 2021 | 16 | 2021 |
| Transcriptional network dynamics during the progression of pluripotency revealed by integrative statistical learning HJ Kim, P Osteil, SJ Humphrey, S Cinghu, AJ Oldfield, E Patrick, ... Nucleic acids research 48 (4), 1828-1842, 2020 | 16 | 2020 |
| Profiling of signal sequence characteristics and requirement of different translocation components C Yim, SJ Jung, JEH Kim, Y Jung, SD Jeong, H Kim Biochimica et Biophysica Acta (BBA)-Molecular Cell Research 1865 (11), 1640-1648, 2018 | 14 | 2018 |
| scClassify: hierarchical classification of cells Y Lin, Y Cao, HJ Kim, A Salim, TP Speed, D Lin, P Yang, JYH Yang BioRxiv, 776948, 2019 | 13 | 2019 |
| Transcriptomic analysis identifies a tolerogenic dendritic cell signature H Robertson, J Li, HJ Kim, JW Rhodes, AN Harman, E Patrick, NM Rogers Frontiers in Immunology 12, 733231, 2021 | 8 | 2021 |
| Protocol for the processing and downstream analysis of phosphoproteomic data with PhosR HJ Kim, T Kim, D Xiao, P Yang STAR protocols 2 (2), 100585, 2021 | 8 | 2021 |
| bioRxiv HJ Kim, T Kim, AJ Oldfield, P Yang | 7 | 2020 |
| Comprehensive characterization of fetal and mature retinal cell identity to assess the fidelity of retinal organoids HJ Kim, M O’Hara-Wright, D Kim, TH Loi, BY Lim, RV Jamieson, ... Stem Cell Reports 18 (1), 175-189, 2023 | 5 | 2023 |
| Defining cell identity beyond the premise of differential gene expression HJ Kim, PPL Tam, P Yang Cell Regeneration 10, 1-3, 2021 | 5 | 2021 |
| Time-resolved phosphoproteome and proteome analysis reveals kinase signaling on master transcription factors during myogenesis D Xiao, M Caldow, HJ Kim, R Blazev, R Koopman, D Manandi, BL Parker, ... Iscience 25 (6), 2022 | 4 | 2022 |
| Integrative analysis reveals histone demethylase LSD1 promotes RNA polymerase II pausing HJ Kim, P Li, T Kim, AJ Oldfield, X Zheng, P Yang Iscience 25 (10), 2022 | 3 | 2022 |
| Cotranslational targeting and posttranslational translocation can cooperate in Spc3 topogenesis S Jung, JEH Kim, T Junne, M Spiess, H Kim Journal of Molecular Biology 433 (18), 167109, 2021 | 3 | 2021 |
