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Stephanie J Spielman
Stephanie J Spielman
Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation
Verified email at ccdatalab.org - Homepage
Title
Cited by
Cited by
Year
Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes
S Weaver, SD Shank, SJ Spielman, M Li, SV Muse, SL Kosakovsky Pond
Molecular biology and evolution 35 (3), 773-777, 2018
6802018
Maximum allowed solvent accessibilites of residues in proteins
MZ Tien, AG Meyer, DK Sydykova, SJ Spielman, CO Wilke
PloS one 8 (11), e80635, 2013
4072013
HyPhy 2.5—a customizable platform for evolutionary hypothesis testing using phylogenies
SL Kosakovsky Pond, AFY Poon, R Velazquez, S Weaver, NL Hepler, ...
Molecular biology and evolution 37 (1), 295-299, 2020
3402020
Causes of evolutionary rate variation among protein sites
J Echave, SJ Spielman, CO Wilke
Nature Reviews Genetics 17 (2), 109-121, 2016
2692016
Regulation of clathrin-mediated endocytosis by hierarchical allosteric activation of AP2
Z Kadlecova, SJ Spielman, D Loerke, A Mohanakrishnan, DK Reed, ...
Journal of Cell Biology 216 (1), 167-179, 2017
1792017
The Relationship between dN/dS and Scaled Selection Coefficients
SJ Spielman, CO Wilke
Molecular biology and evolution 32 (4), 1097-1108, 2015
1212015
Pyvolve: a flexible Python module for simulating sequences along phylogenies
SJ Spielman, CO Wilke
PloS one 10 (9), e0139047, 2015
952015
Evolution of viral genomes: interplay between selection, recombination, and other forces
SJ Spielman, S Weaver, SD Shank, BR Magalis, M Li, ...
Evolutionary genomics: statistical and computational methods, 427-468, 2019
542019
Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design
A Shahmoradi, DK Sydykova, SJ Spielman, EL Jackson, ET Dawson, ...
Journal of molecular evolution 79, 130-142, 2014
512014
Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak
AG Meyer, SJ Spielman, T Bedford, CO Wilke
Virus Evolution 1 (1), vev006, 2015
322015
Kosakovsky Pond, SL Evolution of viral genomes: Interplay between selection, recombination, and other forces
SJ Spielman, S Weaver, SD Shank, BR Magalis, M Li
Methods Mol. Biol 1910, 427-468, 2019
282019
Relative model fit does not predict topological accuracy in single-gene protein phylogenetics
SJ Spielman
Molecular biology and evolution 37 (7), 2110-2123, 2020
262020
Membrane environment imposes unique selection pressures on transmembrane domains of G protein-coupled receptors
SJ Spielman, CO Wilke
Journal of Molecular Evolution 76, 172-182, 2013
262013
The evolving redox chemistry and bioavailability of vanadium in deep time
EK Moore, J Hao, SJ Spielman, N Yee
Geobiology 18 (2), 127-138, 2020
242020
Extensively parameterized mutation–selection models reliably capture site-specific selective constraint
SJ Spielman, CO Wilke
Molecular biology and evolution 33 (11), 2990-3002, 2016
242016
Measuring evolutionary rates of proteins in a structural context
DK Sydykova, BR Jack, SJ Spielman, CO Wilke
F1000Research 6, 2017
222017
Comprehensive, structurally-informed alignment and phylogeny of vertebrate biogenic amine receptors
SJ Spielman, K Kumar, CO Wilke
PeerJ 3, e773, 2015
212015
Relative evolutionary rate inference in HyPhy with LEISR
SJ Spielman, SL Kosakovsky Pond
PeerJ 6, e4339, 2018
202018
Relative evolutionary rates in proteins are largely insensitive to the substitution model
SJ Spielman, SL Kosakovsky Pond
Molecular Biology and Evolution, 2018
192018
A Comparison of One-Rate and Two-Rate Inference Frameworks for Site-Specific dN/dS Estimation
SJ Spielman, S Wan, CO Wilke
Genetics 204 (2), 499-511, 2016
18*2016
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