Foivos Gypas
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Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data
A Kanitz, F Gypas, AJ Gruber, AR Gruber, G Martin, M Zavolan
Genome biology 16 (1), 1-26, 2015
High-throughput identification of C/D box snoRNA targets with CLIP and RiboMeth-seq
R Gumienny, DJ Jedlinski, A Schmidt, F Gypas, G Martin, A Vina-Vilaseca, ...
Nucleic acids research 45 (5), 2341-2353, 2017
Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms
AJ Gruber, F Gypas, A Riba, R Schmidt, M Zavolan
Nature methods 15 (10), 832-836, 2018
Aberrant interaction of FUS with the U1 snRNA provides a molecular mechanism of FUS induced amyotrophic lateral sclerosis
D Jutzi, S Campagne, R Schmidt, S Reber, J Mechtersheimer, F Gypas, ...
Nature communications 11 (1), 1-14, 2020
mpMoRFsDB: a database of molecular recognition features in membrane proteins
F Gypas, GN Tsaousis, SJ Hamodrakas
Bioinformatics 29 (19), 2517-2518, 2013
Human enteric microbiome: Its role in health and disease
ΑFA Mentis, F Gypas, AF Mentis
Archives of Hellenic Medicine 30 (3), 272-288, 2013
Ewing sarcoma breakpoint region 1 prevents transcription-associated genome instability
N Mittal, C Kunz, F Gypas, S Kishore, G Martin, F Wenzel, ...
bioRxiv, 034215, 2015
Protease-mediated processing of Argonaute proteins controls small RNA association
RK Gudipati, K Braun, F Gypas, D Hess, J Schreier, SH Carl, RF Ketting, ...
Molecular Cell, 2021
A disease annotation study of gene signatures in a breast cancer microarray dataset
F Gypas, ES Bei, M Zervakis, S Sfakianakis
2011 Annual International Conference of the IEEE Engineering in Medicine and …, 2011
Nanopore sequencing reveals endogenous NMD-targeted isoforms in human cells
ED Karousis, F Gypas, M Zavolan, O Mühlemann
bioRxiv, 2021
Gene expression signatures of a preclinical mouse model during colorectal cancer progression under low-dose metronomic chemotherapy
H Ho-Xuan, G Lehmann, P Glazar, F Gypas, N Eichner, K Heizler, ...
Cancers 13 (1), 49, 2021
ZARP: Automated processing of RNA-seq data
M Katsantoni, F Gypas, M Bak, A Börsch, D Burri, CJ Herrmann, P Iborra, ..., 2020
Computational methods for the identification and quantification of transcript isoforms from next generation sequencing data
F Gypas
University_of_Basel, 2018
Human microbiome and the methods of its study – metagenomics.
F Gypas, ΑFA Mentis
Acta Microbiologica Hellenica 59 (2), 7-16, 2014
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Articles 1–14