Matúš Kalaš
Matúš Kalaš
Computational Biology Unit, Department of Informatics, University of Bergen
Verified email at - Homepage
Cited by
Cited by
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats
J Ison, M Kalaš, I Jonassen, D Bolser, M Uludag, H McWilliam, J Malone, ...
Bioinformatics 29 (10), 1325-1332, 2013
FreeContact: fast and free software for protein contact prediction from residue co-evolution
L Kaján, TA Hopf, M Kalaš, DS Marks, B Rost
BMC bioinformatics 15 (1), 85, 2014
Tools and data services registry: a community effort to document bioinformatics resources
J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2016
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
T Katayama, MD Wilkinson, KF Aoki-Kinoshita, S Kawashima, ...
Journal of biomedical semantics 5, 5, 2014
The Genomic HyperBrowser: an analysis web server for genome-scale data
GK Sandve, S Gundersen, M Johansen, IK Glad, K Gunathasan, L Holden, ...
Nucleic acids research 41 (W1), W133-W141, 2013
The EMBRACE web service collection
S Pettifer, J Ison, M Kalaš, D Thorne, P McDermott, I Jonassen, A Liaquat, ...
Nucleic acids research 38 (suppl_2), W683-W688, 2010
Community-driven development for computational biology at Sprints, Hackathons and Codefests
S Möller, E Afgan, M Banck, RJP Bonnal, T Booth, J Chilton, PJA Cock, ...
BMC bioinformatics 15 (14), 1-7, 2014
Identifying elemental genomic track types and representing them uniformly
S Gundersen, M Kalaš, O Abul, A Frigessi, E Hovig, GK Sandve
BMC bioinformatics 12 (1), 1-17, 2011
BioXSD: the common data-exchange format for everyday bioinformatics web services
M Kalaš, P Puntervoll, A Joseph, E Bartaševičiūtė, A Töpfer, ...
Bioinformatics 26 (18), i540-i546, 2010
The bio. tools registry of software tools and data resources for the life sciences
J Ison, H Ienasescu, P Chmura, E Rydza, H Ménager, M Kalaš, ...
Genome biology 20 (1), 1-4, 2019
Robust cross-platform workflows: how technical and scientific communities collaborate to develop, test and share best practices for data analysis
S Möller, SW Prescott, L Wirzenius, P Reinholdtsen, B Chapman, P Prins, ...
Data Science and Engineering 2 (3), 232-244, 2017
Workshop on laboratory protocol standards for the molecular methods database
T Klingström, L Soldatova, R Stevens, TE Roos, MA Swertz, KM Müller, ...
New biotechnology 30 (2), 109-113, 2013
Community curation of bioinformatics software and data resources
J Ison, H Ménager, B Brancotte, E Jaaniso, A Salumets, T Raček, ...
Briefings in bioinformatics 21 (5), 1697-1705, 2020
Using registries to integrate bioinformatics tools and services into workbench environments
H Ménager, M Kalaš, K Rapacki, J Ison
International Journal on Software Tools for Technology Transfer 18 (6), 581-586, 2016
ReGaTE: registration of galaxy tools in elixir
O Doppelt-Azeroual, F Mareuil, E Deveaud, M Kalaš, N Soranzo, ...
GigaScience 6 (6), gix022, 2017
Sprints, Hackathons and Codefests as community gluons in computational biology
S Möller, E Afgan, M Banck, PJA Cock, M Kalas, L Kajan, P Prins, J Quinn, ...
EMBnet. journal 19 (B), 40-42, 2013
Norwegian e-infrastructure for life sciences (NeLS)
KM Tekle, S Gundersen, K Klepper, LA Bongo, IA Raknes, X Li, W Zhang, ...
F1000Research 7, 2018
biotoolsSchema: a formalized schema for bioinformatics software description
J Ison, H Ienasescu, E Rydza, P Chmura, K Rapacki, A Gaignard, ...
GigaScience 10 (1), giaa157, 2021
Perspectives on automated composition of workflows in the life sciences
AL Lamprecht, M Palmblad, J Ison, V Schwämmle, MS Al Manir, I Altintas, ...
F1000Research 10, 2021
Efforts towards accessible and reliable bioinformatics
M Kalaš
The University of Bergen, 2015
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