| Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon MA Haendel, JP Balhoff, FB Bastian, DC Blackburn, JA Blake, Y Bradford, ... Journal of biomedical semantics 5, 1-13, 2014 | 141 | 2014 |
| The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals FB Bastian, J Roux, A Niknejad, A Comte, SS Fonseca Costa, ... Nucleic acids research 49 (D1), D831-D847, 2021 | 135 | 2021 |
| The SwissLipids knowledgebase for lipid biology L Aimo, R Liechti, N Hyka-Nouspikel, A Niknejad, A Gleizes, L Götz, ... Bioinformatics 31 (17), 2860-2866, 2015 | 118 | 2015 |
| In vitro and in silico processes to identify differentially expressed proteins N Allet, N Barrillat, T Baussant, C Boiteau, P Botti, L Bougueleret, N Budin, ... Proteomics 4 (8), 2333-2351, 2004 | 90 | 2004 |
| High‐performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics J Colinge, A Masselot, I Cusin, E Mahé, A Niknejad, G Argoud‐Puy, ... Proteomics 4 (7), 1977-1984, 2004 | 84 | 2004 |
| Updates in Rhea—an expert curated resource of biochemical reactions A Morgat, T Lombardot, KB Axelsen, L Aimo, A Niknejad, ... Nucleic acids research, gkw990, 2016 | 74 | 2016 |
| Updates in Rhea: SPARQLing biochemical reaction data T Lombardot, A Morgat, KB Axelsen, L Aimo, N Hyka-Nouspikel, ... Nucleic acids research 47 (D1), D596-D600, 2019 | 70 | 2019 |
| Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method J Dorier, I Crespo, A Niknejad, R Liechti, M Ebeling, I Xenarios BMC bioinformatics 17, 1-19, 2016 | 52 | 2016 |
| Updates in Rhea—a manually curated resource of biochemical reactions A Morgat, KB Axelsen, T Lombardot, R Alcántara, L Aimo, M Zerara, ... Nucleic acids research 43 (D1), D459-D464, 2015 | 51 | 2015 |
| The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations FB Bastian, MC Chibucos, P Gaudet, M Giglio, GL Holliday, H Huang, ... Database 2015, bav043, 2015 | 42 | 2015 |
| Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics MN Loviglio, CR Beck, JJ White, M Leleu, T Harel, N Guex, A Niknejad, ... Genome medicine 8, 1-15, 2016 | 31 | 2016 |
| Experiments in searching small proteins in unannotated large eukaryotic genomes J Colinge, I Cusin, S Reffas, E Mahé, A Niknejad, PA Rey, H Mattou, ... Journal of proteome research 4 (1), 167-174, 2005 | 20 | 2005 |
| The minimum information about a molecular interaction causal statement (MI2CAST) V Touré, S Vercruysse, ML Acencio, RC Lovering, S Orchard, G Bradley, ... Bioinformatics 36 (24), 5712-5718, 2020 | 19 | 2020 |
| vHOG, a multispecies vertebrate ontology of homologous organs groups A Niknejad, A Comte, G Parmentier, J Roux, FB Bastian, ... Bioinformatics 28 (7), 1017-1020, 2012 | 18 | 2012 |
| Uncovering hidden duplicated content in public transcriptomics data M Rosikiewicz, A Comte, A Niknejad, M Robinson-Rechavi, FB Bastian Database 2013, bat010, 2013 | 11 | 2013 |
| An Extended, Boolean Model of the Septation Initiation Network in S.Pombe Provides Insights into Its Regulation A Chasapi, P Wachowicz, A Niknejad, P Collin, A Krapp, E Cano, ... PloS one 10 (8), e0134214, 2015 | 10 | 2015 |
| Identification of biomarkers for glycaemic deterioration in type 2 diabetes RC Slieker, LA Donnelly, E Akalestou, L Lopez-Noriega, R Melhem, ... Nature communications 14 (1), 2533, 2023 | 9 | 2023 |
| Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation A Bekkar, A Estreicher, A Niknejad, C Casals-Casas, A Bridge, I Xenarios, ... Database 2018, bay031, 2018 | 7 | 2018 |
| Secreted Polypeptide Species Reduced in Cardiovascular Disorders G Argoud-Puy, N Bederr, L Bougueleret, I Cusin, E Mahe, A Niknejad, ... US Patent App. 10/564,698, 2008 | 5 | 2008 |
| Secreted peptides L Bougueleret, C Jeandenans, A Niknejad US Patent App. 10/521,005, 2006 | 5 | 2006 |
