A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature Biotechnology, 2013 | 1177 | 2013 |
The Edinburgh human metabolic network reconstruction and its functional analysis H Ma, A Sorokin, A Mazein, A Selkov, E Selkov, O Demin, I Goryanin Molecular systems biology 3 (1), 135, 2007 | 522 | 2007 |
COVID-19 Disease Map, building a computational repository of SARS-CoV-2 virus-host interaction mechanisms M Ostaszewski, A Mazein, ME Gillespie, I Kuperstein, A Niarakis, ... Scientific data 7 (1), 136, 2020 | 144 | 2020 |
Representing and querying disease networks using graph databases A Lysenko, IA Roznovăţ, M Saqi, A Mazein, CJ Rawlings, C Auffray BioData Mining 9 (1), 23, 2016 | 105 | 2016 |
Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms A Mazein, M Ostaszewski, I Kuperstein, S Watterson, N Le Novère, ... NPJ Systems Biology and Applications 4 (1), 21, 2018 | 93 | 2018 |
A comprehensive machine-readable view of the mammalian cholesterol biosynthesis pathway A Mazein, S Watterson, WY Hsieh, WJ Griffiths, P Ghazal Biochemical Pharmacology 86 (1), 56-66, 2013 | 92 | 2013 |
MINERVA—a platform for visualization and curation of molecular interaction networks P Gawron, M Ostaszewski, V Satagopam, S Gebel, A Mazein, M Kuzma, ... NPJ systems biology and applications 2 (1), 1-6, 2016 | 86 | 2016 |
COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms M Ostaszewski, A Niarakis, A Mazein, I Kuperstein, R Phair, ... Molecular systems biology 17 (10), e10387, 2021 | 81 | 2021 |
Community-driven roadmap for integrated disease maps M Ostaszewski, S Gebel, I Kuperstein, A Mazein, A Zinovyev, U Dogrusoz, ... Briefings in Bioinformatics 10, 2018 | 62 | 2018 |
Systems biology graphical notation: process description language level 1 version 2.0 A Rougny, V Touré, S Moodie, I Balaur, T Czauderna, H Borlinghaus, ... Journal of integrative bioinformatics 16 (2), 20190022, 2019 | 53 | 2019 |
Systems medicine: the future of medical genomics, healthcare, and wellness M Saqi, J Pellet, I Roznovat, A Mazein, S Ballereau, B De Meulder, ... Systems Medicine, 43-60, 2016 | 52 | 2016 |
A computational framework for complex disease stratification from multiple large-scale datasets B De Meulder, D Lefaudeux, AT Bansal, A Mazein, A Chaiboonchoe, ... BMC Systems Biology 12 (1), 60, 2018 | 40 | 2018 |
A model of flux regulation in the cholesterol biosynthesis pathway: Immune mediated graduated flux reduction versus statin-like led stepped flux reduction S Watterson, ML Guerriero, M Blanc, A Mazein, L Loewe, KA Robertson, ... Biochimie 95 (3), 613-621, 2013 | 38 | 2013 |
Newt: a comprehensive web-based tool for viewing, constructing and analyzing biological maps. H Balci, MC Siper, N Saleh, I Safarli, L Roy, M Kilicarslan, R Ozaydin, ... Bioinformatics 37 (10), 2021 | 32 | 2021 |
Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks I Balaur, A Mazein, M Saqi, A Lysenko, CJ Rawlings, C Auffray Bioinformatics 33 (7), 1096-1098, 2017 | 32 | 2017 |
RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis V Singh, GD Kalliolias, M Ostaszewski, M Veyssiere, E Pilalis, P Gawron, ... Database 2020, baaa017, 2020 | 31 | 2020 |
AsthmaMap: An expert-driven computational representation of disease mechanisms. A Mazein, RG Knowles, I Adcock, KF Chung, CE Wheelock, ... Clinical and Experimental Allergy: journal of the British Society for …, 2018 | 25 | 2018 |
EpiGeNet: a graph database of interdependencies between genetic and epigenetic events in colorectal cancer I Balaur, M Saqi, A Barat, A Lysenko, A Mazein, CJ Rawlings, HJ Ruskin, ... Journal of Computational Biology 24 (10), 969-980, 2017 | 23 | 2017 |
STON: exploring biological pathways using the SBGN standard and graph databases V Touré, A Mazein, D Waltemath, I Balaur, M Saqi, R Henkel, J Pellet, ... BMC Bioinformatics 17 (1), 494, 2016 | 22 | 2016 |
Upper respiratory tract mucosal immunity for SARS-CoV-2 vaccines R Fraser, A Orta-Resendiz, A Mazein, DH Dockrell Trends in molecular medicine 29 (4), 255-267, 2023 | 21 | 2023 |