| ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ... Nucleic acids research 37 (suppl_1), D868-D872, 2009 | 484 | 2009 |
| Modeling sample variables with an Experimental Factor Ontology J Malone, E Holloway, T Adamusiak, M Kapushesky, J Zheng, ... Bioinformatics 26 (8), 1112-1118, 2010 | 358 | 2010 |
| ArrayExpress update—an archive of microarray and high-throughput sequencing-based functional genomics experiments H Parkinson, U Sarkans, N Kolesnikov, N Abeygunawardena, T Burdett, ... Nucleic acids research 39 (suppl_1), D1002-D1004, 2010 | 354 | 2010 |
| Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments M Kapushesky, T Adamusiak, T Burdett, A Culhane, A Farne, A Filippov, ... Nucleic acids research 40 (D1), D1077-D1081, 2012 | 171 | 2012 |
| The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button M Swertz, M Dijkstra, T Adamusiak, J van der Velde, A Kanterakis, E Roos, ... BMC bioinformatics 11 (Suppl 12), S12, 2010 | 86 | 2010 |
| OntoCAT-simple ontology search and integration in Java, R and REST/JavaScript T Adamusiak, T Burdett, N Kurbatova, KJ van der Velde, ... BMC bioinformatics 12 (1), 218, 2011 | 54* | 2011 |
| Translating standards into practice–one semantic web API for gene expression HF Deus, E Prud’hommeaux, M Miller, J Zhao, J Malone, T Adamusiak, ... Journal of biomedical informatics 45 (4), 782-794, 2012 | 22 | 2012 |
| Observ‐OM and Observ‐TAB: Universal syntax solutions for the integration, search, and exchange of phenotype and genotype information T Adamusiak, H Parkinson, J Muilu, E Roos, KJ van der Velde, ... Human mutation 33 (5), 867-873, 2012 | 22 | 2012 |
| Next generation phenotyping using the unified medical language system T Adamusiak, N Shimoyama, M Shimoyama JMIR medical informatics 2 (1), e5, 2014 | 17 | 2014 |
| VarioML framework for comprehensive variation data representation and exchange M Byrne, IFAC Fokkema, O Lancaster, T Adamusiak, A Ahonen-Bishopp, ... BMC bioinformatics 13 (1), 254, 2012 | 17 | 2012 |
| ontoCAT: an R package for ontology traversal and search N Kurbatova, T Adamusiak, P Kurnosov, MA Swertz, M Kapushesky Bioinformatics 27 (17), 2468-2470, 2011 | 16 | 2011 |
| Quality assurance in LOINC using Description Logic T Adamusiak, O Bodenreider AMIA Annual Symposium Proceedings 2012, 1099, 2012 | 13 | 2012 |
| Anatomy ontologies and potential users: bridging the gap RS Travillian, T Adamusiak, T Burdett, M Gruenberger, J Hancock, ... Journal of biomedical semantics 2 (4), 1-10, 2011 | 10 | 2011 |
| EHR-based phenome wide association study in pancreatic cancer T Adamusiak, M Shimoyama AMIA Summits on Translational Science Proceedings 2014, 9, 2014 | 6 | 2014 |
| Nucleic Acids Res. 33 H Parkinson, C Whitton, R Schmid, M Thomson, M Blaxter Database Issue, D553–D555, 2005 | 5 | 2005 |
| Rapid Development of an Ontology of Coriell Cell Lines. C Pang, T Adamusiak, HE Parkinson, J Malone ICBO, 2011 | 1 | 2011 |
| The Coriell Cell Line Ontology: Rapidly Developing Large Ontologies C Pang, T Adamusiak, H Parkinson, J Malone Bio-Ontologies 2011, 2011 | 1 | 2011 |
| Package ‘ontoCAT’ N Kurbatova, T Adamusiak, P Kurnosov, M Swertz, M Kapushevsky, ... | | 2015 |
| Ontologies Put More Meaning into Meaningful Use. T Adamusiak, N Shimoyama, A Fuiks, M Shimoyama SWAT4LS, 2012 | | 2012 |
| ClinMynEHR: ontology based clinical data portal M Shimoyama, T Adamusiak, J DePons, W Liu F1000Research 3, 2012 | | 2012 |
Helen ParkinsonEuropean Bioinformatics Institute - Head of Molecular Archives, Team LeaderVerified email at ebi.ac.uk
