| Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes S Paul, J Sidney, B Peters, A Sette Proceedings of the 5th ACM Conference on Bioinformatics, Computational …, 2014 | 172 | 2014 |
| Automatic generation of validated specific epitope sets S Carrasco Pro, J Sidney, S Paul, C Lindestam Arlehamn, D Weiskopf, ... Journal of immunology research 2015, 2015 | 80 | 2015 |
| Global landscape of mouse and human cytokine transcriptional regulation S Carrasco Pro, A Dafonte Imedio, CS Santoso, KA Gan, JA Sewell, ... Nucleic Acids Research 46 (18), 9321-9337, 2018 | 52 | 2018 |
| Differential Recognition of Mycobacterium tuberculosis–Specific Epitopes as a Function of Tuberculosis Disease History TJ Scriba, C Carpenter, SC Pro, J Sidney, M Musvosvi, V Rozot, ... American journal of respiratory and critical care medicine 196 (6), 772-781, 2017 | 48 | 2017 |
| Identification of single nucleotide non-coding driver mutations in cancer KA Gan, S Carrasco Pro, JA Sewell, JI Fuxman Bass Frontiers in genetics 9, 16, 2018 | 36 | 2018 |
| Microbiota epitope similarity either dampens or enhances the immunogenicity of disease-associated antigenic epitopes S Carrasco Pro, CS Lindestam Arlehamn, SK Dhanda, C Carpenter, ... PLoS One 13 (5), e0196551, 2018 | 31 | 2018 |
| Comprehensive mapping of the human cytokine gene regulatory network CS Santoso, Z Li, S Lal, S Yuan, KA Gan, LM Agosto, X Liu, SC Pro, ... Nucleic acids research 48 (21), 12055-12073, 2020 | 24 | 2020 |
| Prediction of genome-wide effects of single nucleotide variants on transcription factor binding S Carrasco Pro, K Bulekova, B Gregor, A Labadorf, JI Fuxman Bass Scientific Reports 10 (1), 17632, 2020 | 19 | 2020 |
| Discovering human transcription factor physical interactions with genetic variants, novel DNA motifs, and repetitive elements using enhanced yeast one-hybrid assays S Shrestha, JA Sewell, CS Santoso, E Forchielli, SC Pro, M Martinez, ... Genome Research 29 (9), 1533-1544, 2019 | 13 | 2019 |
| singleCellTK: Interactive analysis of single cell RNA-seq data DF Jenkins, T Faits, MM Khan, E Briars, SC Pro, WE Johnson R package version 1 (3), 2019 | 13* | 2019 |
| Improved pan‐specific MHC class I peptide‐binding predictions using a novel representation of the MHC‐binding cleft environment S Carrasco Pro, M Zimic, M Nielsen Tissue antigens 83 (2), 94-100, 2014 | 11 | 2014 |
| TsAg5, a Taenia solium cysticercus protein with a marginal trypsin-like activity in the diagnosis of human neurocysticercosis A Rueda, C Sifuentes, RH Gilman, AH Gutiérrez, R Piña, N Chile, ... Molecular and biochemical parasitology 180 (2), 115-119, 2011 | 9 | 2011 |
| Widespread perturbation of ETS factor binding sites in cancer S Carrasco Pro, H Hook, D Bray, D Berenzy, D Moyer, M Yin, AT Labadorf, ... Nature Communications 14 (1), 913, 2023 | 2 | 2023 |
| Multimodal real world data reveals immunogenomic drivers of acquired and primary resistance to immune checkpoint blockade MR Keddar, SC Pro, K Burke, AC Stewart, M Cobbold, R Stewart, ... Cancer Research 84 (6_Supplement), 5100-5100, 2024 | | 2024 |
| 620 Multimodal real world data reveals immunogenomic drivers of acquired and primary resistance to immune checkpoint blockade MR Keddar, SC Pro, K Burke, R Rabbie, A Stewart, M Cobbold, R Stewart, ... Journal for ImmunoTherapy of Cancer 11 (Suppl 1), 2023 | | 2023 |
| Transcriptional Regulation Landscape in Health and Disease SC Pro Boston University, 2020 | | 2020 |
Juan Fuxman BassBoston UniversityVerified email at bu.edu
