Li Song
Li Song
Department of Biomedical Data Science, Dartmouth College
Verified email at - Homepage
Cited by
Cited by
Centrifuge: rapid and sensitive classification of metagenomic sequences
D Kim, L Song, FP Breitwieser, SL Salzberg
Genome research 26 (12), 1721-1729, 2016
Thousands of exon skipping events differentiate among splicing patterns in sixteen human tissues
L Florea, L Song, SL Salzberg
F1000Research 2, 2013
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
L Song, L Florea
GigaScience 4 (1), s13742-015-0089-y, 2015
Lighter: fast and memory-efficient sequencing error correction without counting
L Song, L Florea, B Langmead
Genome biology 15, 1-13, 2014
TRUST4: immune repertoire reconstruction from bulk and single-cell RNA-seq data
L Song, D Cohen, Z Ouyang, Y Cao, X Hu, XS Liu
Nature methods 18 (6), 627-630, 2021
CLASS: constrained transcript assembly of RNA-seq reads
L Song, L Florea
BMC bioinformatics 14, 1-8, 2013
CLASS2: accurate and efficient splice variant annotation from RNA-seq reads
L Song, S Sabunciyan, L Florea
Nucleic acids research 44 (10), e98-e98, 2016
Hybrid assembly with long and short reads improves discovery of gene family expansions
JR Miller, P Zhou, J Mudge, J Gurtowski, H Lee, T Ramaraj, BP Walenz, ...
BMC genomics 18, 1-12, 2017
Fast alignment and preprocessing of chromatin profiles with Chromap
H Zhang, L Song, X Wang, H Cheng, C Wang, CA Meyer, T Liu, M Tang, ...
Nature communications 12 (1), 6566, 2021
Rascaf: improving genome assembly with RNA sequencing data
L Song, DS Shankar, L Florea
The plant genome 9 (3), plantgenome2016.03.0027, 2016
Immune receptor repertoires in pediatric and adult acute myeloid leukemia
J Zhang, X Hu, J Wang, AD Sahu, D Cohen, L Song, Z Ouyang, J Fan, ...
Genome medicine 11, 1-11, 2019
A multi-sample approach increases the accuracy of transcript assembly
L Song, S Sabunciyan, G Yang, L Florea
Nature communications 10 (1), 5000, 2019
Efficient and accurate KIR and HLA genotyping with massively parallel sequencing data
L Song, G Bai, XS Liu, B Li, H Li
Genome Research 33 (6), 923-931, 2023
Comprehensive characterizations of immune receptor repertoire in tumors and cancer immunotherapy studies
L Song, Z Ouyang, D Cohen, Y Cao, J Altreuter, G Bai, X Hu, KJ Livak, ...
Cancer immunology research 10 (7), 788-799, 2022
Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA
L Yang, J Wang, J Altreuter, A Jhaveri, CJ Wong, L Song, J Fu, L Taing, ...
Nature Protocols 18 (8), 2404-2414, 2023
Genomic differences between nasal Staphylococcus aureus from hog slaughterhouse workers and their communities
Y You, L Song, BAS Nonyane, LB Price, EK Silbergeld
PloS one 13 (3), e0193820, 2018
Centrifuger: lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification
L Song, B Langmead
Genome Biology 25 (1), 106, 2024
T1K: efficient and accurate KIR and HLA genotyping with next-generation sequencing data
L Song, G Bai, XS Liu, B Li, H Li
bioRxiv, 2022.10. 26.513955, 2022
Full resolution HLA and KIR gene annotations for human genome assemblies
Y Zhou, L Song, H Li
Genome Research, gr. 278985.124, 2024
Cd70 Deficiency Impairs CD4+ and CD8+ T-cell immune surveillance in Bcl6-driven diffuse large B-cell lymphomas
E Mandato, E Calabretta, G Bai, L Song, T Ma, V Shanmugam, ...
Blood 142, 1624, 2023
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