| Nucleosome stability distinguishes two different promoter types at all protein-coding genes in yeast S Kubik, MJ Bruzzone, P Jacquet, JL Falcone, J Rougemont, D Shore Molecular cell 60 (3), 422-434, 2015 | 197 | 2015 |
| Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein gene transcription B Knight, S Kubik, B Ghosh, MJ Bruzzone, M Geertz, V Martin, ... Genes & development 28 (15), 1695-1709, 2014 | 130 | 2014 |
| Sequence-directed action of RSC remodeler and general regulatory factors modulates+ 1 nucleosome position to facilitate transcription S Kubik, E O¢Duibhir, WJ de Jonge, S Mattarocci, B Albert, JL Falcone, ... Molecular cell 71 (1), 89-102. e5, 2018 | 122 | 2018 |
| Opposing chromatin remodelers control transcription initiation frequency and start site selection S Kubik, MJ Bruzzone, D Challal, R Dreos, S Mattarocci, P Bucher, D Libri, ... Nature structural & molecular biology 26 (8), 744-754, 2019 | 108 | 2019 |
| Chromatin fiber invasion and nucleosome displacement by the Rap1 transcription factor M Mivelaz, AM Cao, S Kubik, S Zencir, R Hovius, I Boichenko, ... Molecular cell 77 (3), 488-500. e9, 2020 | 74 | 2020 |
| General regulatory factors control the fidelity of transcription by restricting non-coding and ectopic initiation D Challal, M Barucco, S Kubik, F Feuerbach, T Candelli, H Geoffroy, ... Molecular cell 72 (6), 955-969. e7, 2018 | 63 | 2018 |
| Sfp1 regulates transcriptional networks driving cell growth and division through multiple promoter-binding modes B Albert, S Tomassetti, Y Gloor, D Dilg, S Mattarocci, S Kubik, L Hafner, ... Genes & development 33 (5-6), 288-293, 2019 | 52 | 2019 |
| Distinct patterns of histone acetyltransferase and Mediator deployment at yeast protein-coding genes MJ Bruzzone, S Grünberg, S Kubik, GE Zentner, D Shore Genes & development 32 (17-18), 1252-1265, 2018 | 51 | 2018 |
| Replication and partitioning of the broad-host-range plasmid RK2 K Kolatka, S Kubik, M Rajewska, I Konieczny Plasmid 64 (3), 119-134, 2010 | 48 | 2010 |
| Cleavage of the antitoxin of the parD toxin–antitoxin system is determined by the ClpAP protease and is modulated by the relative ratio of the toxin and the antitoxin E Diago-Navarro, AM Hernández-Arriaga, S Kubik, I Konieczny, ... Plasmid 70 (1), 78-85, 2013 | 41 | 2013 |
| Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples S Kubik, AC Marques, X Xing, J Silvery, C Bertelli, F De Maio, ... Clinical Microbiology and Infection 27 (7), 1036. e1-1036. e8, 2021 | 34 | 2021 |
| Establishing nucleosome architecture and stability at promoters: Roles of pioneer transcription factors and the RSC chromatin remodeler S Kubik, MJ Bruzzone, D Shore Bioessays 39 (5), 1600237, 2017 | 32 | 2017 |
| Opposing effects of DNA on proteolysis of a replication initiator S Kubik, K Wegrzyn, M Pierechod, I Konieczny Nucleic acids research 40 (3), 1148-1159, 2012 | 28 | 2012 |
| A Reply to “MNase-Sensitive Complexes in Yeast: Nucleosomes and Non-histone Barriers,” by Chereji et al. S Kubik, MJ Bruzzone, B Albert, D Shore Molecular cell 65 (3), 578-580, 2017 | 27 | 2017 |
| Mutational hotspot in the SARS-CoV-2 Spike protein N-terminal domain conferring immune escape potential S Kubik, N Arrigo, J Bonet, Z Xu Viruses 13 (11), 2114, 2021 | 14 | 2021 |
| Dé nervaud N, Jacquet P, Ozkan B, Rougemont J, Maerkl SJ, Naef F, Shore D. 2014. Two distinct promoter architectures centered on dynamic nucleosomes control ribosomal protein … B Knight, S Kubik, B Ghosh, MJ Bruzzone, M Geertz, V Martin Genes & Development 28, 1695-1709, 0 | 6 | |
| TFIID or not TFIID, a continuing transcriptional SAGA S Kubik, MJ Bruzzone, D Shore The EMBO journal 36 (3), 248-249, 2017 | 5 | 2017 |
| ChEC-seq: a robust method to identify protein-DNA interactions genome-wide MJ Bruzzone, B Albert, L Hafner, S Kubik, A Lezaja, S Mattarocci, D Shore biorxiv, 2021.02. 18.431798, 2021 | 4 | 2021 |
| Guidelines for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples S Kubik, AC Marques, X Xing, J Silvery, C Bertelli, F De Maio, ... bioRxiv, 2020.12. 01.405738, 2020 | 2 | 2020 |
| Benefits of applying molecular barcoding systems are not uniform across different genomic applications J Bieler, S Kubik, M Macheret, C Pozzorini, A Willig, Z Xu Journal of Translational Medicine 21 (1), 305, 2023 | | 2023 |
