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Dave Clements
Dave Clements
Galaxy Project, Johns Hopkins University
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Year
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
38922018
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Cˇech, ...
Nucleic Acids Research, 2016
17472016
The Zebrafish Information Network: the zebrafish model organism database
J Sprague, L Bayraktaroglu, D Clements, T Conlin, D Fashena, K Frazer, ...
Nucleic acids research 34 (suppl_1), D581-D585, 2006
3102006
Squeaky wheel optimization
DE Joslin, DP Clements
Journal of Artificial Intelligence Research 10, 353-373, 1999
2951999
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ...
Nucleic acids research 48 (W1), W395-W402, 2020
1782020
The Zebrafish Information Network (ZFIN): the zebrafish model organism database
J Sprague, D Clements, T Conlin, P Edwards, K Frazer, K Schaper, ...
Nucleic acids research 31 (1), 241-243, 2003
1512003
A high-resolution anatomical ontology of the developing murine genitourinary tract
MH Little, J Brennan, K Georgas, JA Davies, DR Davidson, RA Baldock, ...
Gene Expression Patterns 7 (6), 680-699, 2007
1492007
Organization of the pronephric kidney revealed by large-scale gene expression mapping
D Raciti, L Reggiani, L Geffers, Q Jiang, F Bacchion, AE Subrizi, ...
Genome biology 9 (5), 1-21, 2008
1192008
Community-driven data analysis training for biology
B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ...
Cell systems 6 (6), 752-758. e1, 2018
882018
Heuristic optimization: A hybrid AI/OR approach
D Clements, J Crawford, D Joslin, G Nemhauser, M Puttlitz, ...
Workshop on Industrial Constraint-Directed Scheduling, 1997
691997
MetaBase—the wiki-database of biological databases
DM Bolser, PY Chibon, N Palopoli, S Gong, D Jacob, VDD Angel, D Swan, ...
Nucleic acids research 40 (D1), D1250-D1254, 2012
612012
" Squeaky Wheel" Optimization
DE Joslin, DP Clements
AAAI/IAAI, 340-346, 1998
611998
Cost-optimizing allocation system and method
DE Joslin, DP Clements
US Patent 6,272,483, 2001
602001
Cyclic scheduling
DL Draper, AK Jonsson, DP Clements, DE Joslin
IJCAI, 1016-1021, 1999
581999
Using Galaxy to Perform Large‐Scale Interactive Data Analyses
J Hillman‐Jackson, D Clements, D Blankenberg, J Taylor, A Nekrutenko, ...
Current protocols in bioinformatics, 10.5. 1-10.5. 47, 2012
572012
Myriad: design and implementation of a federated database prototype
EP Lim, SY Hwang, J Srivastava, D Clements, M Ganesh
Software: Practice and Experience 25 (5), 533-562, 1995
461995
Grü ning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. 2016
E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Cˇech, ...
The Galaxy platform for accessible, reproducible and collaborative …, 2016
332016
The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data
S Jung, N Menda, S Redmond, RM Buels, M Friesen, Y Bendana, ...
Database 2011, 2011
322011
Myriad: Design and implementation of a federated database prototype
D Clements, M Ganesh, SY Hwang, EP Lim, K Mediratta, J Srivastava, ...
Technical Report, Deparment of Computer Science, University of Minnesota …, 1994
201994
The MYRIAD federated database prototype
SY Hwang, EP Lim, HR Yang, S Musukula, K Mediratta, M Ganesh, ...
ACM SIGMOD Record 23 (2), 518, 1994
141994
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