Vriend G

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Chris SanderDana-Farber Cancer Institute, Harvard Medical School, Broad Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Rob HooftProgramme Manager Data Stewardship at DTLVerified email at dtls.nl
Sander NabuursLead Pharma Medicine, OssVerified email at leadpharma.com
Eddy ArnoldBoard of Governors and Distinguished Professor of Chemistry and Chemical Biology, Rutgers UniversityVerified email at cabm.rutgers.edu
Robbie P. JoostenNetherlands Cancer InstituteVerified email at nki.nl
Geerten W. VuisterProfessor of Structural Biology; University of LeicesterVerified email at le.ac.uk
John E. JohnsonThe Scripps Research InstituteVerified email at scripps.edu
David Lutje HulsikLAVA Therapeutics NVVerified email at lavatherapeutics.com
Jurgen F. DoreleijersAvans University of Applied SciencesVerified email at avans.nl
Fabien CampagneSenior Software Engineer for Machine Learning, Xandr, AT&TVerified email at cornell.edu
Jens Erik NielsenVice President, Enzyme Research, Novozymes A/SVerified email at novozymes.com
Wouter G. TouwData Scientist, DSMVerified email at dsm.com
Bert L. de GrootMax Planck Institute for biophysical chemistryVerified email at gwdg.de
Reinhard SchneiderHead of Bioinformatics Core Facility, Luxembourg Centre for Systems Biomedicine (LCSB), UniversityVerified email at uni.lu
Wim VrankenResearch professor, Vrije Universiteit Brussel, BelgiumVerified email at vub.be
Burkhard RostProfessor of Computer Science & Computational Biology & Bioinformatics, TUM, MunichVerified email at tum.de
Stephen PettiferReader, School of Computer Science, The University of ManchesterVerified email at manchester.ac.uk
Anastassis PerrakisPrincipal Investigator, Netherlands Cancer Institute and Oncode Institute, and Professor, UtrechtVerified email at nki.nl
Thomas LüttekeLecturer (Akademischer Rat), Justus-Liebig-University GießenVerified email at vetmed.uni-giessen.de
Terri AttwoodProfessor of Bioinformatics, School of Computer Science, The University of Manchester, UKVerified email at bioinf.man.ac.uk

Vriend G

Professor Bioinformatics RadboudUMC Nijmegen

Verified email at radboudumc.nl - Homepage

Protein structure bioinformatics


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WHAT IF: a molecular modeling and drug design program G Vriend Journal of molecular graphics 8 (1), 52-56, 1990	4366	1990
Errors in protein structures RWW Hooft, G Vriend, C Sander, EE Abola Nature 381 (6580), 272-272, 1996	2548	1996
Structure of a human common cold virus and functional relationship to other picornaviruses MG Rossmann, E Arnold, JW Erickson, EA Frankenberger, JP Griffith, ... Nature 317 (6033), 145-153, 1985	1712	1985
Increasing the precision of comparative models with YASARA NOVA—a self‐parameterizing force field E Krieger, G Koraimann, G Vriend Proteins: Structure, Function, and Bioinformatics 47 (3), 393-402, 2002	1467	2002
Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: Four approaches that performed well in CASP8 E Krieger, K Joo, J Lee, J Lee, S Raman, J Thompson, M Tyka, D Baker, ... Proteins: Structure, Function, and Bioinformatics 77 (S9), 114-122, 2009	1153	2009
YASARA View—molecular graphics for all devices—from smartphones to workstations E Krieger, G Vriend Bioinformatics 30 (20), 2981-2982, 2014	929	2014
Making optimal use of empirical energy functions: force‐field parameterization in crystal space E Krieger, T Darden, SB Nabuurs, A Finkelstein, G Vriend Proteins: Structure, Function, and Bioinformatics 57 (4), 678-683, 2004	890	2004
Heterozygous germline mutations in the p53 homolog p63 are the cause of EEC syndrome J Celli, P Duijf, BCJ Hamel, M Bamshad, B Kramer, APT Smits, ... Cell 99 (2), 143-153, 1999	816	1999
Human dectin-1 deficiency and mucocutaneous fungal infections B Ferwerda, G Ferwerda, TS Plantinga, JA Willment, AB van Spriel, ... New England Journal of Medicine 361 (18), 1760-1767, 2009	787	2009
Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces H Venselaar, TAH Te Beek, RKP Kuipers, ML Hekkelman, G Vriend BMC bioinformatics 11 (1), 1-10, 2010	754	2010
A series of PDB related databases for everyday needs RP Joosten, TAH Te Beek, E Krieger, ML Hekkelman, RWW Hooft, ... Nucleic acids research 39 (suppl_1), D411-D419, 2010	694	2010
A text-mining analysis of the human phenome MA Van Driel, J Bruggeman, G Vriend, HG Brunner, JAM Leunissen European journal of human genetics 14 (5), 535-542, 2006	664	2006
PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules DMF Van Aalten, R Bywater, JBC Findlay, M Hendlich, RWW Hooft, ... Journal of computer-aided molecular design 10 (3), 255-262, 1996	662	1996
A series of PDB-related databanks for everyday needs WG Touw, C Baakman, J Black, TAH Te Beek, E Krieger, RP Joosten, ... Nucleic acids research 43 (D1), D364-D368, 2015	647	2015
Mutations in SMAD3 cause a syndromic form of aortic aneurysms and dissections with early-onset osteoarthritis IMBH van de Laar, RA Oldenburg, G Pals, JW Roos-Hesselink, ... Nature genetics 43 (2), 121-126, 2011	621	2011
PredictProtein—an open resource for online prediction of protein structural and functional features G Yachdav, E Kloppmann, L Kajan, M Hecht, T Goldberg, T Hamp, ... Nucleic acids research 42 (W1), W337-W343, 2014	604	2014
Conserved role of a complement-like protein in phagocytosis revealed by dsRNA knockout in cultured cells of the mosquito, Anopheles gambiae EA Levashina, LF Moita, S Blandin, G Vriend, M Lagueux, FC Kafatos Cell 104 (5), 709-718, 2001	589	2001
The site of attachment in human rhinovirus 14 for antiviral agents that inhibit uncoating TJ Smith, MJ Kremer, M Luo, G Vriend, E Arnold, G Kamer, MG Rossmann, ... Science 233 (4770), 1286-1293, 1986	553	1986
Rational engineering of enzyme stability VGH Eijsink, A Bjørk, S Gåseidnes, R Sirevåg, B Synstad, B van den Burg, ... Journal of biotechnology 113 (1-3), 105-120, 2004	538	2004
New ways to boost molecular dynamics simulations E Krieger, G Vriend Journal of computational chemistry 36 (13), 996-1007, 2015	531	2015

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