| Pan-cancer analysis of whole genomes I The, TPCA of Whole, Genomes Consortium Nature 578 (7793), 82, 2020 | 367 | 2020 |
| Spatial genomic heterogeneity within localized, multifocal prostate cancer PC Boutros, M Fraser, NJ Harding, R De Borja, D Trudel, E Lalonde, ... Nature genetics 47 (7), 736-745, 2015 | 347 | 2015 |
| mrsFAST: a cache-oblivious algorithm for short-read mapping F Hach, F Hormozdiari, C Alkan, F Hormozdiari, I Birol, EE Eichler, ... Nature methods 7 (8), 576-577, 2010 | 300 | 2010 |
| Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ... Bioinformatics 26 (12), i350-i357, 2010 | 251 | 2010 |
| From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer AV Lapuk, C Wu, AW Wyatt, A McPherson, BJ McConeghy, S Brahmbhatt, ... The Journal of Pathology 227 (3), 286-297, 2012 | 164 | 2012 |
| SCALCE: boosting Sequence Compression Algorithms using Locally Consistent Encoding F Hach, I Numanagić, C Alkan, SC Sahinalp Bioinformatics 28 (23), 3051-3057., 2012 | 148 | 2012 |
| Alu repeat discovery and characterization within human genomes F Hormozdiari, C Alkan, M Ventura, I Hajirasouliha, M Malig, F Hach, ... Genome Research 21 (6), 840-849, 2011 | 111 | 2011 |
| Comparison of high-throughput sequencing data compression tools I Numanagić, JK Bonfield, F Hach, J Voges, J Ostermann, C Alberti, ... nature methods 13 (12), 1005-1008, 2016 | 84 | 2016 |
| Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer C Wu, AW Wyatt, AV Lapuk, A McPherson, BJ McConeghy, RH Bell, ... The Journal of pathology 227 (1), 53-61, 2012 | 69 | 2012 |
| Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data A McPherson, C Wu, I Hajirasouliha, F Hormozdiari, F Hach, A Lapuk, ... Bioinformatics 27 (11), 1481-1488, 2011 | 54 | 2011 |
| mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications F Hach, I Sarrafi, F Hormozdiari, C Alkan, EE Eichler, SC Sahinalp Nucleic acids research 42 (W1), W494-W500, 2014 | 53 | 2014 |
| Cliiq: Accurate comparative detection and quantification of expressed isoforms in a population YY Lin, P Dao, F Hach, M Bakhshi, F Mo, A Lapuk, C Collins, SC Sahinalp International Workshop on Algorithms in Bioinformatics, 178-189, 2012 | 46 | 2012 |
| Colormap: Correcting long reads by mapping short reads E Haghshenas, F Hach, SC Sahinalp, C Chauve Bioinformatics 32 (17), i545-i551, 2016 | 45 | 2016 |
| PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data S Malikic, FR Mehrabadi, S Ciccolella, MK Rahman, C Ricketts, ... Genome research 29 (11), 1860-1877, 2019 | 42 | 2019 |
| DeeZ: reference-based compression by local assembly F Hach, I Numanagic, SC Sahinalp Nature methods 11 (11), 1082-1084, 2014 | 42 | 2014 |
| BAP1 haploinsufficiency predicts a distinct immunogenic class of malignant peritoneal mesothelioma R Shrestha, N Nabavi, YY Lin, F Mo, S Anderson, S Volik, HH Adomat, ... Genome medicine 11 (1), 1-12, 2019 | 41 | 2019 |
| Model expansion as a framework for modelling and solving search problems D Mitchell, E Ternovska, F Hach, R Mohebali Technical Report TR 2006-24, School of Computing Science, Simon Fraser …, 2006 | 40 | 2006 |
| SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA C Kockan, F Hach, I Sarrafi, RH Bell, B McConeghy, K Beja, A Haegert, ... Bioinformatics 33 (1), 26-34, 2017 | 36 | 2017 |
| Sensitive and fast mapping of di-base encoded reads F Hormozdiari, F Hach, SC Sahinalp, EE Eichler, C Alkan Bioinformatics 27 (14), 1915-1921, 2011 | 28 | 2011 |
| Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection AY Lee, AD Ewing, K Ellrott, Y Hu, KE Houlahan, JC Bare, SMG Espiritu, ... Genome biology 19 (1), 1-15, 2018 | 26 | 2018 |
Cenk SahinalpSenior Investigator, Cancer Data Science Lab, National Cancer Institute, NIHVerified email at nih.gov
