| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 81 | 2021 |
| Improved docking of protein models by a combination of alphafold2 and cluspro U Ghani, I Desta, A Jindal, O Khan, G Jones, N Hashemi, S Kotelnikov, ... BioRxiv, 2021.09. 07.459290, 2021 | 58 | 2021 |
| Combined eco-routing and power-train control of plug-in hybrid electric vehicles in transportation networks A Houshmand, CG Cassandras, N Zhou, N Hashemi, B Li, H Peng IEEE Transactions on Intelligent Transportation Systems 23 (8), 11287-11300, 2021 | 16 | 2021 |
| Assessing the binding properties of CASP14 targets and models M Egbert, U Ghani, R Ashizawa, S Kotelnikov, T Nguyen, I Desta, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1922-1939, 2021 | 13 | 2021 |
| Improved cluster ranking in protein–protein docking using a regression approach S Sotudian, IT Desta, N Hashemi, S Zarbafian, D Kozakov, P Vakili, ... Computational and structural biotechnology journal 19, 2269-2278, 2021 | 9 | 2021 |
| Improved prediction of MHC-peptide binding using protein language models N Hashemi, B Hao, M Ignatov, IC Paschalidis, P Vakili, S Vajda, ... Frontiers in Bioinformatics 3, 2023 | 6 | 2023 |
| Elucidation of protein function using computational docking and hotspot analysis by ClusPro and FTMap G Jones, A Jindal, U Ghani, S Kotelnikov, M Egbert, N Hashemi, S Vajda, ... Acta Crystallographica Section D: Structural Biology 78 (6), 690-697, 2022 | 4 | 2022 |
Dima KozakovProfessor, Department of Applied Mathematics and StatisticsVerified email at stonybrook.edu
